Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G214200.1 | Wheat | cytosol | 98.63 | 98.63 |
| TraesCS4B01G213500.1 | Wheat | cytosol | 96.42 | 96.42 |
| HORVU4Hr1G060950.3 | Barley | cytosol | 95.22 | 95.22 |
| Os03t0265500-01 | Rice | plasma membrane | 86.69 | 86.25 |
| EER95129 | Sorghum | cytosol | 82.25 | 81.56 |
| Zm00001d047848_P001 | Maize | cytosol | 81.74 | 81.05 |
| Zm00001d028543_P001 | Maize | cytosol | 81.74 | 81.05 |
| GSMUA_Achr6P33630_001 | Banana | cytosol, mitochondrion, nucleus | 67.58 | 67.92 |
| GSMUA_Achr5P28930_001 | Banana | cytosol | 63.99 | 66.96 |
| GSMUA_Achr9P03690_001 | Banana | cytosol | 67.75 | 65.84 |
| TraesCS3A01G367500.1 | Wheat | cytosol | 59.9 | 63.02 |
| TraesCS1A01G279100.1 | Wheat | cytosol | 61.43 | 60.81 |
| GSMUA_Achr8P02350_001 | Banana | cytosol | 17.58 | 59.88 |
| KRH14993 | Soybean | cytosol | 57.85 | 59.68 |
| KRH73146 | Soybean | cytosol | 59.39 | 59.59 |
| VIT_13s0019g03380.t01 | Wine grape | cytosol | 60.75 | 59.53 |
| KRG97777 | Soybean | cytosol | 58.7 | 58.31 |
| KRH31107 | Soybean | cytosol | 58.36 | 57.97 |
| CDY24941 | Canola | cytosol | 56.31 | 55.93 |
| Bra000156.1-P | Field mustard | cytosol | 56.14 | 55.76 |
| AT2G39940.1 | Thale cress | cytosol | 56.14 | 55.57 |
| Solyc05g052620.2.1 | Tomato | cytosol | 57.17 | 55.56 |
| CDY20501 | Canola | cytosol | 55.8 | 54.32 |
| Bra005000.1-P | Field mustard | cytosol | 55.63 | 54.06 |
| CDX74819 | Canola | cytosol | 55.12 | 53.83 |
| CDX93223 | Canola | cytosol | 52.56 | 52.12 |
| CDY07041 | Canola | cytosol | 52.39 | 51.86 |
| CDX93225 | Canola | cytosol | 52.56 | 51.85 |
| CDY07040 | Canola | cytosol | 53.07 | 51.24 |
| Bra017045.1-P | Field mustard | cytosol | 53.07 | 51.24 |
| Bra017044.1-P | Field mustard | cytosol | 52.39 | 50.83 |
| CDY60996 | Canola | endoplasmic reticulum, golgi | 55.97 | 46.66 |
| TraesCS5A01G281100.1 | Wheat | cytosol | 30.89 | 31.81 |
| TraesCS2A01G286200.1 | Wheat | cytosol | 29.86 | 30.49 |
| TraesCS4A01G001800.1 | Wheat | cytosol | 30.55 | 29.44 |
| TraesCS1A01G091300.1 | Wheat | cytosol | 29.52 | 29.22 |
| TraesCS7A01G176200.1 | Wheat | cytosol | 30.2 | 28.37 |
| TraesCS6A01G315300.1 | Wheat | plastid | 30.55 | 27.67 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G091200.1 | EnsemblPlantsGene:TraesCS4A01G091200 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR43944 | PANTHER:PTHR43944:SF2 | SEG:seg | SUPFAM:SSF52047 | MapMan:11.7.2.1.1 | : |
Description
No Description!
Coordinates
chr4A:+:97870315..97872705
Molecular Weight (calculated)
65432.1 Da
IEP (calculated)
6.503
GRAVY (calculated)
-0.049
Length
586 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGDGRHLGR TMSFGIPDVA LGLVMGCVED PWDRDAISLV CRHWCKVDAL SRKHVTVAMA YSTTPDRLFR RFPCLESLKL KAKPRASMFN LIPEDWGGSA
101: SPWIRELSAS FHFLKVLHLR RMIVSDDDVA VLVRAKAHML VSLKLDRCSG FSTSSLALLA RCCKKLETLF LEESSVAEKE NDEWLRELAT SNTVLETLNF
201: FLTDLRASPA HLLLLVRNCR RLKTLKISDC FMSDLVDLFR TAETLQDFAG GSFDDQDQGG NYANYYFPPS VQHLSLLYMG TNEMQILFPY GATLKKLDLQ
301: FTFLTTEDHC QLVQRCPNLE VLEVRDVIGD RGLEVIARTC KKLQRLRVER GDDDQGGLED EQGRVTQVGL MAVAEGCPDL EYWAVHVSDI TNAALEAIGA
401: FSKNLNDFRL VLLDREVHIT ELPLDNGVRA LLRGCTKLRR FAFYVRPGAL SDIGLSYVGE FSKTVRYMLL GNAGGSDDGL LAFARGCPSL QKLELRSCCF
501: SERALAVAAL QLKSLRYLWV QGYKASPTGT DLMAMVRPFW NIEFIAPNQD EPCPEGQAQI LAYYSLAGAR TDCPQSVIPL HPSVGS
101: SPWIRELSAS FHFLKVLHLR RMIVSDDDVA VLVRAKAHML VSLKLDRCSG FSTSSLALLA RCCKKLETLF LEESSVAEKE NDEWLRELAT SNTVLETLNF
201: FLTDLRASPA HLLLLVRNCR RLKTLKISDC FMSDLVDLFR TAETLQDFAG GSFDDQDQGG NYANYYFPPS VQHLSLLYMG TNEMQILFPY GATLKKLDLQ
301: FTFLTTEDHC QLVQRCPNLE VLEVRDVIGD RGLEVIARTC KKLQRLRVER GDDDQGGLED EQGRVTQVGL MAVAEGCPDL EYWAVHVSDI TNAALEAIGA
401: FSKNLNDFRL VLLDREVHIT ELPLDNGVRA LLRGCTKLRR FAFYVRPGAL SDIGLSYVGE FSKTVRYMLL GNAGGSDDGL LAFARGCPSL QKLELRSCCF
501: SERALAVAAL QLKSLRYLWV QGYKASPTGT DLMAMVRPFW NIEFIAPNQD EPCPEGQAQI LAYYSLAGAR TDCPQSVIPL HPSVGS
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.