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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000156.1-P
Bra000874.1-P
Bra003735.1-P
Bra003778.1-P
Bra005000.1-P
Bra006010.1-P
Bra006246.1-P
Bra006326.1-P
Bra008172.1-P
Bra008231.1-P
Bra009354.1-P
Bra015801.1-P
Bra015880.1-P
Bra017044.1-P
Bra017045.1-P
Bra022254.1-P
Bra023453.1-P
Bra025713.1-P
Bra032760.1-P
Bra033654.1-P
Bra035336.1-P
Bra035858.1-P
Bra036257.1-P
Bra038444.1-P
Bra038607.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G39940.1 Bra025713.1-P AT1G19180.1 17637677
AT2G39940.1 Bra025713.1-P AT1G19180.1 18547396
AT2G39940.1 Bra003778.1-P AT1G74950.1 18547396
AT2G39940.1 Bra008172.1-P AT1G74950.1 18547396
AT2G39940.1 Bra015880.1-P AT1G74950.1 18547396
AT2G39940.1 Bra003735.1-P AT1G75950.1 12172031
AT2G39940.1 Bra008231.1-P AT1G75950.1 12172031
AT2G39940.1 Bra015801.1-P AT1G75950.1 12172031
AT2G39940.1 Bra003735.1-P AT1G75950.1 12445118
AT2G39940.1 Bra008231.1-P AT1G75950.1 12445118
AT2G39940.1 Bra015801.1-P AT1G75950.1 12445118
AT2G39940.1 Bra003735.1-P AT1G75950.1 14749489
AT2G39940.1 Bra008231.1-P AT1G75950.1 14749489
AT2G39940.1 Bra015801.1-P AT1G75950.1 14749489
AT2G39940.1 Bra000156.1-P AT2G39940.1 12724535
AT2G39940.1 Bra005000.1-P AT2G39940.1 12724535
AT2G39940.1 Bra017044.1-P AT2G39940.1 12724535
AT2G39940.1 Bra017045.1-P AT2G39940.1 12724535
AT2G39940.1 Bra022254.1-P AT3G17860.1 17637675
AT2G39940.1 Bra022254.1-P AT3G17860.1 18547396
AT2G39940.1 Bra022254.1-P AT3G17860.1 19309455
AT2G39940.1 Bra000874.1-P AT4G02570.1 12172031
AT2G39940.1 Bra036257.1-P AT4G02570.1 12172031
AT2G39940.1 Bra000874.1-P AT4G02570.1 12445118
AT2G39940.1 Bra036257.1-P AT4G02570.1 12445118
AT2G39940.1 Bra000874.1-P AT4G02570.1 12724535
AT2G39940.1 Bra036257.1-P AT4G02570.1 12724535
AT2G39940.1 Bra032760.1-P AT4G14110.1 12724535
AT2G39940.1 Bra038444.1-P AT4G14110.1 12724535
AT2G39940.1 Bra006010.1-P AT5G08590.1 12172031
AT2G39940.1 Bra009354.1-P AT5G08590.1 12172031
AT2G39940.1 Bra006010.1-P AT5G08590.1 14749489
AT2G39940.1 Bra009354.1-P AT5G08590.1 14749489
AT2G39940.1 Bra006246.1-P AT5G14250.1 12724535
AT2G39940.1 Bra006326.1-P AT5G14250.1 12724535
AT2G39940.1 Bra023453.1-P AT5G14250.1 12724535
AT2G39940.1 Bra033654.1-P AT5G42970.1 12724535
AT2G39940.1 Bra035336.1-P AT5G42970.1 12724535
AT2G39940.1 Bra035858.1-P AT5G63110.1 12445118
AT2G39940.1 Bra038607.1-P AT5G63110.1 12445118
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY07041 Canola cytosol 96.19 98.14
Bra017045.1-P Field mustard cytosol 90.73 90.28
Bra000156.1-P Field mustard cytosol 79.97 81.86
Bra005000.1-P Field mustard cytosol 80.96 81.09
AT2G39940.1 Thale cress cytosol 77.48 79.05
KRH31107 Soybean cytosol 63.41 64.92
KRH14993 Soybean cytosol 60.93 64.79
KRG97777 Soybean cytosol 63.08 64.58
VIT_13s0019g03380.t01 Wine grape cytosol 63.58 64.21
KRH73146 Soybean cytosol 62.09 64.21
Solyc05g052620.2.1 Tomato cytosol 62.75 62.85
GSMUA_Achr6P33630_001 Banana cytosol, mitochondrion, nucleus 57.12 59.18
GSMUA_Achr5P28930_001 Banana cytosol 53.97 58.21
GSMUA_Achr9P03690_001 Banana cytosol 58.11 58.21
Zm00001d042833_P001 Maize cytosol 53.64 54.18
Os01t0853400-01 Rice cytosol 53.15 53.95
Os05t0449500-01 Rice cytosol 53.31 53.94
Zm00001d012338_P001 Maize cytosol 52.98 53.69
GSMUA_Achr8P02350_001 Banana cytosol 15.23 53.49
HORVU3Hr1G085210.2 Barley cytosol 52.32 53.2
HORVU4Hr1G060950.3 Barley cytosol 51.49 53.07
EES01769 Sorghum cytosol 52.32 53.02
EES18318 Sorghum cytosol 52.48 52.92
TraesCS3B01G399200.1 Wheat cytosol 51.99 52.86
TraesCS3A01G367500.1 Wheat cytosol 48.68 52.78
TraesCS3D01G360400.2 Wheat cytosol 51.99 52.77
Zm00001d038273_P001 Maize cytosol 52.15 52.59
Zm00001d010082_P001 Maize cytosol 52.15 52.59
TraesCS4D01G214200.1 Wheat cytosol 50.83 52.39
TraesCS4A01G091200.1 Wheat cytosol 50.83 52.39
HORVU1Hr1G073230.1 Barley cytosol 51.16 52.28
TraesCS4B01G213500.1 Wheat cytosol 50.66 52.22
TraesCS1D01G278400.1 Wheat cytosol 50.99 52.03
Os03t0265500-01 Rice plasma membrane 50.66 51.95
TraesCS1A01G279100.1 Wheat cytosol 50.66 51.69
TraesCS1B01G288100.1 Wheat cytosol 50.66 51.69
EER95129 Sorghum cytosol 49.17 50.25
Zm00001d028543_P001 Maize cytosol 48.51 49.58
Zm00001d047848_P001 Maize cytosol 48.51 49.58
Bra032954.1-P Field mustard cytosol 28.97 30.43
Bra026953.1-P Field mustard cytosol 28.97 30.28
Bra003518.1-P Field mustard cytosol 29.47 29.97
Bra016754.1-P Field mustard cytosol 28.97 29.66
Bra007720.1-P Field mustard cytosol 28.97 29.41
Bra000842.1-P Field mustard cytosol 27.98 28.84
Bra034191.1-P Field mustard cytosol 27.81 28.72
Bra013798.1-P Field mustard cytosol 28.15 28.01
Bra000604.1-P Field mustard cytosol, plastid 27.81 27.68
Bra014378.1-P Field mustard cytosol 27.48 26.52
Protein Annotations
EnsemblPlants:Bra017044.1EnsemblPlants:Bra017044.1-PEnsemblPlantsGene:Bra017044Gene3D:1.20.1280.50Gene3D:3.80.10.10InterPro:IPR032675
InterPro:LRR_dom_sfPANTHER:PTHR43944PANTHER:PTHR43944:SF6SUPFAM:SSF52047UniParc:UPI0002544D6EUniProt:M4DKL3
MapMan:11.7.2.1.1:::::
Description
AT2G39940 (E=6e-160) COI1 | COI1 (CORONATINE INSENSITIVE 1); protein binding / ubiquitin-protein ligase
Coordinates
chrA04:-:16962995..16965303
Molecular Weight (calculated)
68820.5 Da
IEP (calculated)
6.279
GRAVY (calculated)
-0.245
Length
604 amino acids
Sequence
(BLAST)
001: MEDPDTKKLR STPRNVDDVI SIVMPYVTDS KDRESASLVN RTWLRADSET RYHVTMALCY ASAPDRLSRR FPNLRSLKLK GKPRAAMFNL IPENWGGFVT
101: PWVNEIALSL RRIRSVHFRR MIVNDLDLDV LARARGDELE VLKLDKCLGF STDGLFTVVK HCRKIKTLVM EESSFLEKDG KWLHELALHN TSLEVLNLYM
201: TELTKLNPRD LETIATNCHR TLVSVKVGDV EMLELVGFFN AAVNLEEFCG GALDEDPETP DKYKKLAFPP KLSRLGLTYL GANEMPMIFP FAAQIRKLDL
301: LYAFLGTDDH CELIQKCPNL EVLETRNVIG DKGLEILAQC CKQLKRLRIE RGADEEGMMD EIWGADEQGN EDLGGFVTQR GLTALAQGCQ ELEYMAVYVT
401: DISNESLRTI GAYLKNLSDF RLVLLDQEER IRDLPLDNGV RSLLMGCEKL RRFAFYLRRG GLTDVGLRYI GQYSPNVRWM LLGYVGETDE GLVEFSREGC
501: CPKLQKLEMR GCCFSERAIA AAVMKLPSLR YLWVQGYRES VTGQDLRVMS RPNWNIELIP ARRVPEVNLG DVREMEHPAH ILAYYSLAGQ RTDCPPTVKV
601: LREL
Best Arabidopsis Sequence Match ( AT2G39940.1 )
(BLAST)
001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
Arabidopsis Description
COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.