Factsheet for Bra033654.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000156.1-P
Bra000529.1-P
Bra000874.1-P
Bra002827.1-P
Bra003438.1-P
Bra005000.1-P
Bra006246.1-P
Bra006326.1-P
Bra007576.1-P
Bra012038.1-P
Bra012303.1-P
Bra012351.1-P
Bra017044.1-P
Bra017045.1-P
Bra017569.1-P
Bra022023.1-P
Bra023453.1-P
Bra024548.1-P
Bra025031.1-P
Bra027422.1-P
Bra027690.1-P
Bra032666.1-P
Bra032760.1-P
Bra033219.1-P
Bra033654.1-P
Bra035336.1-P
Bra036257.1-P
Bra038444.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42970.1	Bra012303.1-P	AT1G02090.1	11742986
AT5G42970.1	Bra032666.1-P	AT1G02090.1	11742986
AT5G42970.1	Bra033219.1-P	AT1G02090.1	11742986
AT5G42970.1	Bra012303.1-P	AT1G02090.1	11854419
AT5G42970.1	Bra032666.1-P	AT1G02090.1	11854419
AT5G42970.1	Bra033219.1-P	AT1G02090.1	11854419
AT5G42970.1	Bra012303.1-P	AT1G02090.1	12615944
AT5G42970.1	Bra032666.1-P	AT1G02090.1	12615944
AT5G42970.1	Bra033219.1-P	AT1G02090.1	12615944
AT5G42970.1	Bra012351.1-P	AT1G22920.1	12615944
AT5G42970.1	Bra024548.1-P	AT1G22920.1	12615944
AT5G42970.1	Bra027690.1-P	AT1G64280.1	19490895
AT5G42970.1	Bra000529.1-P	AT2G26990.1	12615944
AT5G42970.1	Bra012038.1-P	AT2G26990.1	12615944
AT5G42970.1	Bra000156.1-P	AT2G39940.1	12724535
AT5G42970.1	Bra005000.1-P	AT2G39940.1	12724535
AT5G42970.1	Bra017044.1-P	AT2G39940.1	12724535
AT5G42970.1	Bra017045.1-P	AT2G39940.1	12724535
AT5G42970.1	Bra027422.1-P	AT3G13550.1	11877375
AT5G42970.1	Bra003438.1-P	AT3G61140.1	11854419
AT5G42970.1	Bra007576.1-P	AT3G61140.1	11854419
AT5G42970.1	Bra003438.1-P	AT3G61140.1	12615944
AT5G42970.1	Bra007576.1-P	AT3G61140.1	12615944
AT5G42970.1	Bra000874.1-P	AT4G02570.1	12724535
AT5G42970.1	Bra036257.1-P	AT4G02570.1	12724535
AT5G42970.1	Bra032760.1-P	AT4G14110.1	11854419
AT5G42970.1	Bra038444.1-P	AT4G14110.1	11854419
AT5G42970.1	Bra032760.1-P	AT4G14110.1	12615944
AT5G42970.1	Bra038444.1-P	AT4G14110.1	12615944
AT5G42970.1	Bra006246.1-P	AT5G14250.1	11742986
AT5G42970.1	Bra006326.1-P	AT5G14250.1	11742986
AT5G42970.1	Bra023453.1-P	AT5G14250.1	11742986
AT5G42970.1	Bra006246.1-P	AT5G14250.1	12615944
AT5G42970.1	Bra006326.1-P	AT5G14250.1	12615944
AT5G42970.1	Bra023453.1-P	AT5G14250.1	12615944
AT5G42970.1	Bra006246.1-P	AT5G14250.1	12724535
AT5G42970.1	Bra006326.1-P	AT5G14250.1	12724535
AT5G42970.1	Bra023453.1-P	AT5G14250.1	12724535
AT5G42970.1	Bra033654.1-P	AT5G42970.1	12615944
AT5G42970.1	Bra035336.1-P	AT5G42970.1	12615944
AT5G42970.1	Bra017569.1-P	AT5G46210.1	16844902
AT5G42970.1	Bra022023.1-P	AT5G46210.1	16844902
AT5G42970.1	Bra025031.1-P	AT5G46210.1	16844902
AT5G42970.1	Bra002827.1-P	AT5G56280.1	11701877
AT5G42970.1	Bra002827.1-P	AT5G56280.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22374	Canola	cytosol	100.0	100.0
CDX71533	Canola	cytosol	99.5	99.5
Bra035336.1-P	Field mustard	cytosol	95.97	95.97
AT5G42970.1	Thale cress	cytosol	92.7	92.7
VIT_18s0001g12250.t01	Wine grape	cytosol	84.38	84.38
KRH39972	Soybean	cytosol	83.38	83.38
KRH23810	Soybean	cytosol	83.12	83.12
Solyc04g080160.2.1	Tomato	cytosol	83.12	83.12
PGSC0003DMT400013225	Potato	cytosol	82.87	82.87
Os03t0197400-01	Rice	cytosol, nucleus, plastid	83.12	82.71
GSMUA_Achr9P19410_001	Banana	cytosol	82.87	82.46
HORVU4Hr1G070980.1	Barley	cytosol	82.62	82.21
TraesCS4B01G262600.1	Wheat	golgi	82.62	82.21
EER92695	Sorghum	cytosol, nucleus, plastid	82.62	82.21
TraesCS4D01G262700.1	Wheat	cytosol, nucleus, plastid	82.37	81.95
TraesCS4A01G041600.1	Wheat	cytosol, nucleus, plastid	81.86	81.45
GSMUA_Achr8P31220_001	Banana	cytosol	76.83	79.84
Zm00001d028143_P002	Maize	cytosol, nucleus, plastid	82.87	74.94
VIT_12s0035g01450.t01	Wine grape	mitochondrion	31.99	72.57

Protein Annotations

Gene3D:1.10.10.10	MapMan:19.2.3.3.1.4	EnsemblPlantsGene:Bra033654	EnsemblPlants:Bra033654.1	EnsemblPlants:Bra033654.1-P	InterPro:CSN4
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008180
InterPro:IPR000717	InterPro:IPR036388	UniProt:M4EXW5	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250
PANTHER:PTHR10855	PANTHER:PTHR10855:SF2	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000253F811
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:	:

Description

AT5G42970 (E=4e-207) COP8, FUS4, EMB134, COP14, CSN4, FUS8, ATS4 | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8); protein binding

Coordinates

chrA06:+:25789116..25791629

Molecular Weight (calculated)

45036.0 Da

IEP (calculated)

4.793

GRAVY (calculated)

-0.285

Length

397 amino acids

Sequence
(BLAST)

001: MEETLRSASA IADQRQKIEQ YKLILSSVLS SNDLLQAKHF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIALFT LTQIQPRVVS FEEQALVIRE
101: KLAALYESEQ EWSRAAQMLS GIDLDSGMRA VDENFKLSKC IQIARLYLED DDAVNAETYI NKASFLVNSS QNEVLNLQYK VCHARILDMK RKFLDAALRY
201: YSISQIEKRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRKPEIDAF AEELRPHQKA TLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLGID PTKAEKIASN MIGQDRMRGS IDQEEAVIHF EDDIEELQQW DHQISGLCQA LNDILDGMAK KGLPVPV

Best Arabidopsis Sequence Match ( AT5G42970.1 )
(BLAST)

001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV

Arabidopsis Description

CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.