Factsheet for Bra012038.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003438.1-P
Bra006246.1-P
Bra006326.1-P
Bra007576.1-P
Bra016291.1-P
Bra023453.1-P
Bra024680.1-P
Bra033654.1-P
Bra035336.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	Bra016291.1-P	AT1G26830.1	12615944
AT2G26990.1	Bra024680.1-P	AT1G26830.1	12615944
AT2G26990.1	Bra003438.1-P	AT3G61140.1	11854419
AT2G26990.1	Bra007576.1-P	AT3G61140.1	11854419
AT2G26990.1	Bra003438.1-P	AT3G61140.1	12615944
AT2G26990.1	Bra007576.1-P	AT3G61140.1	12615944
AT2G26990.1	Bra006246.1-P	AT5G14250.1	12615944
AT2G26990.1	Bra006326.1-P	AT5G14250.1	12615944
AT2G26990.1	Bra023453.1-P	AT5G14250.1	12615944
AT2G26990.1	Bra033654.1-P	AT5G42970.1	12615944
AT2G26990.1	Bra035336.1-P	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04472	Canola	cytosol	50.12	97.49
Bra000529.1-P	Field mustard	cytosol	48.01	93.39
AT2G26990.1	Thale cress	cytosol	47.42	92.26
GSMUA_Achr6P23660_001	Banana	cytosol	43.21	85.22
KRH64921	Soybean	nucleus	43.44	84.51
Solyc11g062430.1.1	Tomato	cytosol	43.33	84.28
VIT_08s0040g00430.t01	Wine grape	cytosol	43.33	84.09
PGSC0003DMT400082384	Potato	cytosol	42.74	83.14
KRH57710	Soybean	nucleus	42.51	82.69
Solyc01g008840.2.1	Tomato	cytosol	42.51	82.69
KRG94968	Soybean	cytosol	43.56	82.67
KRG94272	Soybean	nucleus	42.39	82.46
Os01t0279200-02	Rice	plasma membrane	42.15	82.0
TraesCS3D01G194400.1	Wheat	nucleus	42.15	82.0
TraesCS3A01G191800.1	Wheat	golgi, unclear	42.15	82.0
HORVU3Hr1G039980.8	Barley	nucleus	42.15	82.0
TraesCS3B01G219800.1	Wheat	cytosol	42.04	81.78
EES02774	Sorghum	cytosol	41.92	81.55
PGSC0003DMT400072227	Potato	nucleus	41.8	81.32
Solyc10g081150.1.1	Tomato	nucleus	41.8	81.32
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	41.8	79.33
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	41.69	76.72
PGSC0003DMT400058484	Potato	cytosol	42.51	75.94
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	9.02	18.38
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	8.9	18.14

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.25.40.570	MapMan:15.5.2.1	MapMan:19.2.3.3.1.2	EnsemblPlantsGene:Bra012038	EnsemblPlants:Bra012038.1
EnsemblPlants:Bra012038.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008180	InterPro:Homeobox-like_sf	InterPro:IPR000717
InterPro:IPR017930	UniProt:M4D6C9	InterPro:Myb_dom	InterPro:PCI_dom	PFAM:PF00249	PFAM:PF01399
PFscan:PS50250	PFscan:PS51294	PANTHER:PTHR10678	PANTHER:PTHR10678:SF3	InterPro:SANT/Myb	SMART:SM00088
SMART:SM00717	SMART:SM00753	SUPFAM:SSF46689	SUPFAM:SSF46785	UniParc:UPI00025418B5	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT2G26990 (E=3e-221) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12)

Coordinates

chrA07:-:10450830..10455454

Molecular Weight (calculated)

97560.6 Da

IEP (calculated)

5.125

GRAVY (calculated)

-0.631

Length

854 amino acids

Sequence
(BLAST)

001: MGGSSPNCLC RWRISDVTSP GKEMAPVLTR VLESCVDLTR GGFIDFGYRE IVDADMEDYG FEYSDEEQEE QDVDIENQYY NSKGNIETEP EEALSGFAEV
101: VRMEPDKAEW GFKALKQTVK IYYRLGKYRE MMDAYREMLT YIKSAVTRNY SEKCINSIMD FVSGSAGQNT GLLQEFYQTT LTALEEAKNE RLWFKTNLKL
201: CNIWFDIGEY RRMTKILKEL HKSCQKEDGT DDQKKGSQLL EVYAIEIQIY TETKDNKKLK QLYQKALAIK SAIPHPRIMG IIRECGGKMH MAERQWAEAA
301: TDFFEAFKNY DEAGNQRRIQ CLKYLVLANM LMESEVNPFD GQEAKPYKND PEILAMTNLV AAYQRNEIIE FEKILKNNRK TIMDDPFIRN YMEDLLKKVR
401: TQVLLKLIKP YTKIGIPFIS KELNVPEKDV TELLVSLILD SRIDGHIDEI NRYLLRGDSA NGRKLHKAVD KWNTQLKSLS MSITNRMGKV LHDSESGQNL
501: ALEKTFHKGP WTSAEDQLLT AYVDKHGEGN WNAVQKQSGL SRCGKSCRLR WVNHLRPSLK KGGFTDKEEQ LVIELHASMG NKWARMAAQL PGRTDNEIKN
601: FWNTRLKKLQ RLGLPIYPDE VREQAMNAAV QNGQNSDHSQ ESLEPDCLEI PEFDFKYLQL NNYQSVLLRN VPMGSPYMSP PKRKRVREPE TDFLDTGGYA
701: ANEQSGQLWN YPFVESNAAK YSSPSEKLEL PSFQCCDPLG DWETQHSNPM LAVESDSTLV ESPLTDCPSS GLLESVVYGS SGEKQATNST DPDSPLLLQS
801: SLFGHIELTP AFANNTETDM VPFGPTSSSE RLTSSLESSD WIRQLLGEDR DYTK

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.