Factsheet for PGSC0003DMT400072227

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400013225
PGSC0003DMT400016765
PGSC0003DMT400052100
PGSC0003DMT400071374

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	PGSC0003DMT400016765	AT1G26830.1	12615944
AT2G26990.1	PGSC0003DMT400071374	AT3G61140.1	11854419
AT2G26990.1	PGSC0003DMT400071374	AT3G61140.1	12615944
AT2G26990.1	PGSC0003DMT400052100	AT5G14250.1	12615944
AT2G26990.1	PGSC0003DMT400013225	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081150.1.1	Tomato	nucleus	99.09	99.09
KRH64921	Soybean	nucleus	90.2	90.2
VIT_08s0040g00430.t01	Wine grape	cytosol	89.29	89.09
TraesCS3D01G194400.1	Wheat	nucleus	88.61	88.61
TraesCS3A01G191800.1	Wheat	golgi, unclear	88.61	88.61
Os01t0279200-02	Rice	plasma membrane	88.61	88.61
HORVU3Hr1G039980.8	Barley	nucleus	88.61	88.61
KRH57710	Soybean	nucleus	88.61	88.61
TraesCS3B01G219800.1	Wheat	cytosol	88.38	88.38
PGSC0003DMT400082384	Potato	cytosol	88.38	88.38
EES02774	Sorghum	cytosol	87.7	87.7
KRG94272	Soybean	nucleus	87.7	87.7
KRG94968	Soybean	cytosol	89.29	87.11
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	87.02	84.89
AT2G26990.1	Thale cress	cytosol	82.69	82.69
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	87.02	82.33
CDY38538	Canola	cytosol	82.23	82.23
CDY04472	Canola	cytosol	82.23	82.23
GSMUA_Achr6P08520_001	Banana	cytosol	35.76	82.2
CDX71478	Canola	cytosol	82.0	82.0
CDX83249	Canola	cytosol	81.78	81.96
PGSC0003DMT400058484	Potato	cytosol	89.07	81.8
Bra000529.1-P	Field mustard	cytosol	81.78	81.78
Bra012038.1-P	Field mustard	nucleus	81.32	41.8
PGSC0003DMT400072856	Potato	plastid	18.68	19.39

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:102580660	MapMan:19.2.3.3.1.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008180	InterPro:IPR000717	UniProt:M1CPW6	InterPro:PCI_dom	PFAM:PF01399
EnsemblPlantsGene:PGSC0003DMG400028109	PGSC:PGSC0003DMG400028109	EnsemblPlants:PGSC0003DMT400072227	PFscan:PS50250	PANTHER:PTHR10678	PANTHER:PTHR10678:SF3
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0002950E26	InterPro:WH_DNA-bd_sf	RefSeq:XP_006339237.1
SEG:seg	:	:	:	:	:

Description

Cop9 signalosome complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400028109]

Coordinates

chr10:-:56793915..56801885

Molecular Weight (calculated)

51269.7 Da

IEP (calculated)

5.871

GRAVY (calculated)

-0.598

Length

439 amino acids

Sequence
(BLAST)

001: MGSDADMEDY GFEYSDEDQE EQDVDIENQY YNSKGMVETD PEGALEGFAE VVQMEPEKAE WGFKALKQTV KIYYRLGRYK QMMDAYREML TYIISAVTRN
101: YSEKCINNIM DFVSGSASQN VGLLREFYET TLKALEEAKN ERLWFKTNLK LCKIWFDMGE YGKMNKIMKE LHRSCQKADG TDDQKKGTQL LEVYAIEIQM
201: YTETKNNKKL KELYGKALTI KSAIPHPRIM GIIRECGGKM HMAQRQWAEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESQVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEIL EFEKILKSNR KTIMDDPFIR NYIEDLLKNI RTQVLLKLIK PYTRIRIPFI SKEINVPEGE VETLLVSLIL DNRIQGHIDQ
401: VNKLLEHCDR SKGMKKYTAI DRWNTQFQSL YQTISNKVG

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.