Factsheet for PGSC0003DMT400052100

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400013225
PGSC0003DMT400023896
PGSC0003DMT400052100
PGSC0003DMT400056930
PGSC0003DMT400058484
PGSC0003DMT400067022
PGSC0003DMT400069203
PGSC0003DMT400071374
PGSC0003DMT400072227
PGSC0003DMT400076584
PGSC0003DMT400082384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14250.1	PGSC0003DMT400067022	AT1G02090.1	12615944
AT5G14250.1	PGSC0003DMT400067022	AT1G02090.1	15703063
AT5G14250.1	PGSC0003DMT400023896	AT1G22920.1	11742986
AT5G14250.1	PGSC0003DMT400069203	AT1G22920.1	11742986
AT5G14250.1	PGSC0003DMT400023896	AT1G22920.1	15703063
AT5G14250.1	PGSC0003DMT400069203	AT1G22920.1	15703063
AT5G14250.1	PGSC0003DMT400023896	AT1G71230.1	11742986
AT5G14250.1	PGSC0003DMT400069203	AT1G71230.1	11742986
AT5G14250.1	PGSC0003DMT400058484	AT2G26990.1	12615944
AT5G14250.1	PGSC0003DMT400072227	AT2G26990.1	12615944
AT5G14250.1	PGSC0003DMT400082384	AT2G26990.1	12615944
AT5G14250.1	PGSC0003DMT400058484	AT2G26990.1	15703063
AT5G14250.1	PGSC0003DMT400072227	AT2G26990.1	15703063
AT5G14250.1	PGSC0003DMT400082384	AT2G26990.1	15703063
AT5G14250.1	PGSC0003DMT400071374	AT3G61140.1	12615944
AT5G14250.1	PGSC0003DMT400071374	AT3G61140.1	15703063
AT5G14250.1	PGSC0003DMT400076584	AT4G14110.1	11742986
AT5G14250.1	PGSC0003DMT400076584	AT4G14110.1	12615944
AT5G14250.1	PGSC0003DMT400076584	AT4G14110.1	15703063
AT5G14250.1	PGSC0003DMT400052100	AT5G14250.1	12615944
AT5G14250.1	PGSC0003DMT400013225	AT5G42970.1	11742986
AT5G14250.1	PGSC0003DMT400013225	AT5G42970.1	12615944
AT5G14250.1	PGSC0003DMT400013225	AT5G42970.1	15703063
AT5G14250.1	PGSC0003DMT400056930	AT5G56280.1	11701877
AT5G14250.1	PGSC0003DMT400056930	AT5G56280.1	12615944
AT5G14250.1	PGSC0003DMT400056930	AT5G56280.1	15703063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093920.2.1	Tomato	cytosol	97.9	97.9
VIT_14s0171g00270.t01	Wine grape	cytosol	75.47	76.18
KRH57651	Soybean	cytosol	72.2	73.05
KRG94317	Soybean	cytosol	71.5	72.34
GSMUA_Achr11P...	Banana	cytosol	68.22	69.19
GSMUA_AchrUn_...	Banana	cytosol	62.38	65.12
Os08t0119000-01	Rice	cytosol	64.72	65.02
CDX91076	Canola	cytosol	63.32	63.62
CDX85608	Canola	cytosol	62.62	63.06
Bra023453.1-P	Field mustard	cytosol	62.38	62.82
EES13281	Sorghum	cytosol	62.85	62.7
Bra006246.1-P	Field mustard	cytosol	61.22	62.23
CDX78568	Canola	cytosol	61.22	62.23
AT5G14250.1	Thale cress	cytosol	60.98	60.84
Zm00001d049652_P001	Maize	cytosol	60.28	60.71
TraesCS7B01G216600.2	Wheat	cytosol	60.51	60.66
TraesCS7D01G312600.2	Wheat	cytosol	60.28	60.42
Zm00001d028517_P001	Maize	cytosol	14.95	58.18
TraesCS7A01G315600.1	Wheat	cytosol	57.71	58.12
Zm00001d035130_P001	Maize	cytosol	63.08	57.94
Bra006326.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	31.07	53.2
HORVU7Hr1G075150.4	Barley	mitochondrion	60.05	52.77
CDX78656	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	30.84	52.59
CDX70553	Canola	mitochondrion	42.76	50.14
CDY26433	Canola	mitochondrion	32.71	31.82

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:102598757	MapMan:19.2.3.3.1.3	InterPro:CSN3	GO:GO:0000338	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987	GO:GO:0010971
GO:GO:0019538	InterPro:IPR000717	UniProt:M1BST4	InterPro:PCI_dom	PFAM:PF01399	EnsemblPlantsGene:PGSC0003DMG400020222
PGSC:PGSC0003DMG400020222	EnsemblPlants:PGSC0003DMT400052100	PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF1	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI00029629B0	InterPro:WH_DNA-bd_sf	RefSeq:XP_006338677.1	SEG:seg

Description

26S proteasome regulatory subunit S3 [Source:PGSC_GENE;Acc:PGSC0003DMG400020222]

Coordinates

chr2:-:47815539..47820480

Molecular Weight (calculated)

48620.8 Da

IEP (calculated)

6.351

GRAVY (calculated)

-0.106

Length

428 amino acids

Sequence
(BLAST)

001: MNLNMNSMES VVAQIQGLSS NSSDITQLHN FLKQSEELLH SDFSRLLSSL AELDPSIHSL GFLYILEACI SFPVAKEHVS ELLVSVARFI NSCSAEQIQL
101: APNKFISVCK KFKDHIFGLE TPIRGVAPML TAIRKLQSSS EQLTTLHADF LLLCILAKCY KTGFSVLEDD IYECDQPREF FLYCYYGGMV CIGQKQFRKA
201: LELLHNVVTA PMSTLNAIAV EAYKKYILVS LIHLGQFSTS FPKYTSSVAQ RNLKNFSQPY LELSNSYGTG RISELETFVQ TNKEKFESDN NLGLVMQVVS
301: SMYKRNIQRL TQTYLTLSLQ DIANTVQLRG PKQAEMHVLQ MIEDGEIYAT INQKDGMVRF LEDPEQYKTC GMIEHIDSSI KRLMVVSKKL TSMDELMSCD
401: PMYLGKVGRE RQRFDFDDFD SVPQKFTV

Best Arabidopsis Sequence Match ( AT5G14250.1 )
(BLAST)

001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM

Arabidopsis Description

CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.