Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049652_P001 | Maize | cytosol | 79.09 | 20.47 |
| EES13281 | Sorghum | cytosol | 79.09 | 20.28 |
| Zm00001d035130_P001 | Maize | cytosol | 84.55 | 19.96 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 40.91 | 17.93 |
| Bra006326.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 40.0 | 17.6 |
| TraesCS7A01G315600.1 | Wheat | cytosol | 65.45 | 16.94 |
| TraesCS7D01G312600.2 | Wheat | cytosol | 65.45 | 16.86 |
| TraesCS7B01G216600.2 | Wheat | cytosol | 65.45 | 16.86 |
| Os08t0119000-01 | Rice | cytosol | 64.55 | 16.67 |
| HORVU7Hr1G075150.4 | Barley | mitochondrion | 66.36 | 14.99 |
| PGSC0003DMT400052100 | Potato | cytosol | 58.18 | 14.95 |
| KRH57651 | Soybean | cytosol | 57.27 | 14.89 |
| Solyc02g093920.2.1 | Tomato | cytosol | 57.27 | 14.72 |
| KRG94317 | Soybean | cytosol | 55.45 | 14.42 |
| GSMUA_AchrUn_... | Banana | cytosol | 52.73 | 14.15 |
| GSMUA_Achr11P... | Banana | cytosol | 53.64 | 13.98 |
| VIT_14s0171g00270.t01 | Wine grape | cytosol | 51.82 | 13.44 |
| AT5G14250.1 | Thale cress | cytosol | 50.0 | 12.82 |
| CDX78568 | Canola | cytosol | 47.27 | 12.35 |
| Bra006246.1-P | Field mustard | cytosol | 47.27 | 12.35 |
| CDX85608 | Canola | cytosol | 46.36 | 12.0 |
| Bra023453.1-P | Field mustard | cytosol | 46.36 | 12.0 |
| CDX91076 | Canola | cytosol | 45.45 | 11.74 |
| CDY26433 | Canola | mitochondrion | 36.36 | 9.09 |
| CDX70553 | Canola | mitochondrion | 11.82 | 3.56 |
Protein Annotations
| EnsemblPlants:Zm00001d028517_P001 | EnsemblPlants:Zm00001d028517_T001 | EnsemblPlantsGene:Zm00001d028517 | Gene3D:1.25.40.570 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008180 | InterPro:CSN3 | InterPro:IPR000717 | InterPro:PCI_dom |
| PANTHER:PTHR10758 | PANTHER:PTHR10758:SF1 | PFAM:PF01399 | PFscan:PS50250 | ProteinID:ONL96255.1 | UniParc:UPI0008448DF1 |
| UniProt:A0A1D6JX17 | MapMan:35.1 | : | : | : | : |
Description
COP9 signalosome complex subunit 3
Coordinates
chr1:-:37964752..37965359
Molecular Weight (calculated)
12556.9 Da
IEP (calculated)
9.755
GRAVY (calculated)
-0.541
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKKQNNKLR SMKNHAQIYF ELSTSYSNGR YTDLETFVES NSAAFQSDNN LGLVKQVLSS MYKRNIQRLT QTYLTLSLED IARSVQLETS GDVEMHVLRM
101: VGVLSRSTGQ
101: VGVLSRSTGQ
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MVLCPTLDFW KLALLV
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MVLCPTLDFW KLALLV
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.