Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025407_P001 | Maize | cytosol | 91.84 | 91.84 |
| OQU81583 | Sorghum | cytosol | 91.84 | 91.84 |
| Os04t0428900-01 | Rice | cytosol | 81.12 | 81.12 |
| TraesCS2A01G301900.1 | Wheat | golgi | 78.06 | 78.06 |
| HORVU2Hr1G074740.2 | Barley | cytosol | 71.94 | 71.94 |
| HORVU2Hr1G074780.1 | Barley | mitochondrion, plastid | 80.61 | 71.17 |
| GSMUA_Achr2P20500_001 | Banana | cytosol | 65.31 | 64.97 |
| Solyc01g104600.2.1 | Tomato | cytosol | 58.67 | 58.38 |
| PGSC0003DMT400076584 | Potato | cytosol | 57.65 | 57.36 |
| KRH43983 | Soybean | cytosol | 56.63 | 56.35 |
| KRH10462 | Soybean | cytosol | 55.61 | 55.33 |
| Bra038444.1-P | Field mustard | cytosol | 55.1 | 54.82 |
| VIT_12s0055g00390.t01 | Wine grape | cytosol | 55.1 | 54.82 |
| CDY12369 | Canola | cytosol | 54.59 | 54.31 |
| CDY27125 | Canola | cytosol | 54.08 | 53.81 |
| CDY01192 | Canola | cytosol | 53.57 | 53.3 |
| AT4G14110.1 | Thale cress | cytosol | 52.55 | 52.28 |
| KRH33363 | Soybean | cytosol | 47.96 | 51.65 |
| CDY12734 | Canola | cytosol | 54.59 | 49.08 |
| Bra032760.1-P | Field mustard | cytosol | 54.08 | 47.96 |
| TraesCS2D01G300400.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 77.04 | 46.75 |
Protein Annotations
| Gene3D:1.25.40.990 | EntrezGene:100273709 | MapMan:19.2.3.3.1.8 | UniProt:B4FX41 | EMBL:BT041679 | InterPro:COP9_CSN8 |
| InterPro:CSN8_PSD8_EIF3K | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 |
| GO:GO:0010387 | GO:GO:0016043 | GO:GO:0019538 | InterPro:IPR000717 | ProteinID:ONM17518.1 | InterPro:PCI_dom |
| PFAM:PF10075 | PFscan:PS50250 | PANTHER:PTHR13339 | UniParc:UPI00017B770A | EnsemblPlantsGene:Zm00001d003685 | EnsemblPlants:Zm00001d003685_P001 |
| EnsemblPlants:Zm00001d003685_T001 | : | : | : | : | : |
Description
COP9 signalosome complex subunit 8
Coordinates
chr2:+:54347998..54351273
Molecular Weight (calculated)
22111.1 Da
IEP (calculated)
5.654
GRAVY (calculated)
-0.217
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSAVQAAL SDKSYSTLAS LCDELLLQAA SQGFTTDEWP YSVHLLAHLY INDLNSARFF WKSLPQEVKD TRPELAAVWR IGQCLWKRDY AGVNTAAQGF
101: EWGPDLADFI TAFLESYRQR IFKLLTSAYS TIRVADVAHF MGMSEEDATN YAVQNGWSLD AAAKMLTVKK PKSQTNQKLD ASKLQRLTEC VFHLEN
101: EWGPDLADFI TAFLESYRQR IFKLLTSAYS TIRVADVAHF MGMSEEDATN YAVQNGWSLD AAAKMLTVKK PKSQTNQKLD ASKLQRLTEC VFHLEN
001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
Arabidopsis Description
CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.