Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12369 | Canola | cytosol | 91.37 | 91.37 |
| CDY27125 | Canola | cytosol | 91.37 | 91.37 |
| AT4G14110.1 | Thale cress | cytosol | 89.85 | 89.85 |
| CDY12734 | Canola | cytosol | 97.97 | 88.53 |
| Bra032760.1-P | Field mustard | cytosol | 98.98 | 88.24 |
| KRH43983 | Soybean | cytosol | 70.56 | 70.56 |
| PGSC0003DMT400076584 | Potato | cytosol | 70.05 | 70.05 |
| VIT_12s0055g00390.t01 | Wine grape | cytosol | 70.05 | 70.05 |
| Solyc01g104600.2.1 | Tomato | cytosol | 69.04 | 69.04 |
| KRH10462 | Soybean | cytosol | 67.51 | 67.51 |
| GSMUA_Achr2P20500_001 | Banana | cytosol | 64.47 | 64.47 |
| KRH33363 | Soybean | cytosol | 57.87 | 62.64 |
| Os04t0428900-01 | Rice | cytosol | 58.38 | 58.67 |
| TraesCS2A01G301900.1 | Wheat | golgi | 56.85 | 57.14 |
| OQU81583 | Sorghum | cytosol | 53.3 | 53.57 |
| Zm00001d003685_P001 | Maize | extracellular | 53.3 | 53.57 |
| Zm00001d025407_P001 | Maize | cytosol | 52.28 | 52.55 |
| HORVU2Hr1G074740.2 | Barley | cytosol | 51.27 | 51.53 |
| HORVU2Hr1G074780.1 | Barley | mitochondrion, plastid | 56.85 | 50.45 |
| TraesCS2D01G300400.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.84 | 34.06 |
Protein Annotations
| Gene3D:1.25.40.990 | MapMan:19.2.3.3.1.8 | EnsemblPlants:CDY01192 | ProteinID:CDY01192 | ProteinID:CDY01192.1 | InterPro:COP9_CSN8 |
| InterPro:CSN8_PSD8_EIF3K | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 |
| GO:GO:0010387 | GO:GO:0016043 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00111299001 | InterPro:IPR000717 | InterPro:PCI_dom |
| PFAM:PF10075 | PFscan:PS50250 | PANTHER:PTHR13339 | UniParc:UPI0004EEFCA8 | : | : |
Description
BnaA04g06270D
Coordinates
chrLK031924:-:1019257..1021016
Molecular Weight (calculated)
22564.8 Da
IEP (calculated)
4.778
GRAVY (calculated)
-0.148
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSPVTEAL AVKSFDKIAD ICDYLMLQVA SEGISFHDDW PYAIHLLGYF YVDDCDSARF LWKTIPTSVK ESKPEVVAAW RIGQRLWTRD YAGVYEAIRG
101: YDWSPEAKDM VAAFSDVYTK RMFQLLLSAY STITIRDLAL FLGMTEDDAA TYVAENGWTV DTASQMVTVK KQAVKREQKV DSSKLQRLTE YVFHLEH
101: YDWSPEAKDM VAAFSDVYTK RMFQLLLSAY STITIRDLAL FLGMTEDDAA TYVAENGWTV DTASQMVTVK KQAVKREQKV DSSKLQRLTE YVFHLEH
001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
Arabidopsis Description
CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.