Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52333 | Canola | cytosol | 97.52 | 97.3 |
| CDX67853 | Canola | cytosol | 91.65 | 89.62 |
| CDY45683 | Canola | cytosol | 91.2 | 89.18 |
| AT3G61140.1 | Thale cress | cytosol | 87.36 | 87.76 |
| Solyc01g091650.2.1 | Tomato | cytosol | 75.62 | 76.14 |
| PGSC0003DMT400071374 | Potato | cytosol | 75.39 | 75.91 |
| KRH65148 | Soybean | cytosol | 74.49 | 74.32 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 73.81 | 74.15 |
| KRH48239 | Soybean | cytosol | 73.81 | 73.32 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 17.61 | 69.64 |
| TraesCS1D01G187600.1 | Wheat | cytosol | 58.47 | 67.62 |
| Os03t0116500-01 | Rice | cytosol | 66.82 | 67.12 |
| EER92981 | Sorghum | cytosol | 66.37 | 66.37 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 66.59 | 66.29 |
| GSMUA_Achr11P... | Banana | cytosol | 67.04 | 65.71 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 65.91 | 65.47 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 65.69 | 65.1 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 65.46 | 65.02 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 65.91 | 64.32 |
| GSMUA_Achr11P... | Banana | cytosol | 65.24 | 64.22 |
| TraesCS1A01G188800.1 | Wheat | cytosol | 62.3 | 63.3 |
| TraesCS1B01G196500.2 | Wheat | cytosol | 62.75 | 61.92 |
| HORVU1Hr1G048620.1 | Barley | plastid | 62.75 | 57.08 |
| HORVU6Hr1G027500.11 | Barley | plastid | 34.99 | 54.58 |
| Zm00001d048502_P002 | Maize | cytosol | 20.99 | 54.39 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 64.11 | 51.64 |
| TraesCS5D01G238500.1 | Wheat | cytosol | 32.96 | 43.84 |
| CDX75945 | Canola | cytosol | 21.67 | 25.53 |
| TraesCS7B01G257700.1 | Wheat | plastid | 39.28 | 25.48 |
| CDY34315 | Canola | cytosol | 16.7 | 19.12 |
| CDY03414 | Canola | cytosol | 16.7 | 19.12 |
| CDX92654 | Canola | cytosol | 16.7 | 19.12 |
| CDY08956 | Canola | extracellular, golgi | 11.96 | 15.87 |
| CDX79636 | Canola | cytosol, nucleus, peroxisome | 12.64 | 11.86 |
| CDY34374 | Canola | nucleus | 2.93 | 10.48 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | UniProt:A0A078JF59 | EnsemblPlants:CDY65304 | ProteinID:CDY65304 | ProteinID:CDY65304.1 |
| InterPro:CSN1 | ncoils:Coil | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 |
| GO:GO:0010388 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00045563001 | InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 |
| PFAM:PF10602 | PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 | SMART:SM00088 |
| SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0004EE4871 | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
BnaCnng46520DBnaCnng46520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JF59]
Coordinates
chrLK034724:-:9745..12371
Molecular Weight (calculated)
50625.6 Da
IEP (calculated)
6.938
GRAVY (calculated)
-0.426
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDDESNGP MMELCTNGGG EETSNRRPII TGEPLDIEAY AAMYKGRTKI MRLIFVANHC GGNQTMQLEA LRMAYDEVKK GENTQLFRDV VNKINGRLGD
101: KYGMDSAWCE AIDRRAEQRK GKLENELSSY RTNLIKESIR MGYNDFGDFY YACGLLNEAF KNYIRTRDYC TTAKHIIHMC MNAILVSIEM GQFSHVSSYV
201: NKVDQNPETL DPIVAAKLRC ASGLAHLELR KYKLAARKFL DVNPELGSSY NEVIAPQDVA TYGGLCALAS FDRSELKAYA KVIDNINFRN FLELVPEVRE
301: FINDFYSSRY ASCLEYLGSL RANLLLDIHL HDHVDTLYDQ IRKKALIQYT LPFVSVDLSR MADAFKTSVS GLEKELEALI TDDQIQARID SHNKILYARH
401: ADQRSATFQK VLQMGNEFDR DVRSMMLRAN LLQHEYHAKG RKP
101: KYGMDSAWCE AIDRRAEQRK GKLENELSSY RTNLIKESIR MGYNDFGDFY YACGLLNEAF KNYIRTRDYC TTAKHIIHMC MNAILVSIEM GQFSHVSSYV
201: NKVDQNPETL DPIVAAKLRC ASGLAHLELR KYKLAARKFL DVNPELGSSY NEVIAPQDVA TYGGLCALAS FDRSELKAYA KVIDNINFRN FLELVPEVRE
301: FINDFYSSRY ASCLEYLGSL RANLLLDIHL HDHVDTLYDQ IRKKALIQYT LPFVSVDLSR MADAFKTSVS GLEKELEALI TDDQIQARID SHNKILYARH
401: ADQRSATFQK VLQMGNEFDR DVRSMMLRAN LLQHEYHAKG RKP
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.