CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G069880.1	Barley	cytosol	5.32	47.62
CDY65304	Canola	cytosol	25.53	21.67
CDX67853	Canola	cytosol	26.06	21.63
CDY52333	Canola	cytosol	25.53	21.62
CDY45683	Canola	cytosol	25.27	20.97
CDX92654	Canola	cytosol	13.3	12.92
CDY03414	Canola	cytosol	13.3	12.92
CDY34315	Canola	cytosol	13.3	12.92
CDY08956	Canola	extracellular, golgi	6.65	7.49
CDX79636	Canola	cytosol, nucleus, peroxisome	6.91	5.51
CDY34374	Canola	nucleus	1.6	4.84

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.1	EnsemblPlants:CDX75945	ProteinID:CDX75945	ProteinID:CDX75945.1	InterPro:CSN1
GO:GO:0000338	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987	GO:GO:0010388	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00123974001	InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PANTHER:PTHR14145
PANTHER:PTHR14145:SF2	InterPro:Rpn7/CSN1	SUPFAM:SSF46785	UniParc:UPI0004EF3CA3	InterPro:WH_DNA-bd_sf	:

Description

BnaC03g40280D

Coordinates

chrLK031805:+:2087151..2092560

Molecular Weight (calculated)

43831.4 Da

IEP (calculated)

8.277

GRAVY (calculated)

-0.282

Length

376 amino acids

Sequence
(BLAST)

001: MVNQRIDSNM KLILVSLKRG KLDDVPKWVN ENRTQYGPLE SIVAAKVACA HALSHMGLGE YKTAALEFLD VDCVALGDTF DQVILPHDVA TYGGLCALAT
101: YDRSEIQQRV FENDHAWLGL APEVRKIIKE AAMLCVEYLQ TIKKTLLLDM YVYQHVEWLL CQIREKALLE YAQPFASLRM CTMASQFRSS VPDLEEELMA
201: LIKKNKLEFA KVVSIDPHNA RWYYKSFRKM VKIYCGLGEY EKMMDATRKM LKYIKGSYQG DSVYRFLQSL CTYSSLDLNM LQELCKITME ALEENKKQYL
301: TVWFRTSLEL RNILFDNRQY TPIKLHKYYQ NVDETNDVAK TRDLRKVYVI EFQLYTETDD KRNKKVQQTL TIPKGI

Best Arabidopsis Sequence Match ( AT3G61140.1 )
(BLAST)

001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L

Arabidopsis Description

CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.