Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92981 | Sorghum | cytosol | 95.28 | 95.71 |
| Os03t0116500-01 | Rice | cytosol | 86.29 | 87.07 |
| Zm00001d048502_P002 | Maize | cytosol | 32.36 | 84.21 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 20.9 | 83.04 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 82.92 | 82.74 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 82.92 | 82.74 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 82.92 | 82.55 |
| PGSC0003DMT400071374 | Potato | cytosol | 70.79 | 71.59 |
| Solyc01g091650.2.1 | Tomato | cytosol | 70.56 | 71.36 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 70.56 | 71.2 |
| GSMUA_Achr11P... | Banana | cytosol | 71.69 | 70.58 |
| GSMUA_Achr11P... | Banana | cytosol | 70.56 | 69.78 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 70.56 | 69.16 |
| KRH65148 | Soybean | cytosol | 68.76 | 68.92 |
| KRH48239 | Soybean | cytosol | 68.31 | 68.16 |
| AT3G61140.1 | Thale cress | cytosol | 66.07 | 66.67 |
| CDY65304 | Canola | cytosol | 66.29 | 66.59 |
| Bra007576.1-P | Field mustard | cytosol | 64.94 | 66.28 |
| CDY52333 | Canola | cytosol | 66.07 | 66.22 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 81.12 | 65.64 |
| CDY45683 | Canola | cytosol | 66.74 | 65.56 |
| HORVU6Hr1G027500.11 | Barley | plastid | 41.8 | 65.49 |
| CDX67853 | Canola | cytosol | 66.07 | 64.9 |
| Bra003438.1-P | Field mustard | cytosol | 66.07 | 64.9 |
| Zm00001d017117_P001 | Maize | plasma membrane | 18.43 | 21.08 |
| Zm00001d003257_P002 | Maize | plastid | 17.75 | 15.28 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | UniProt:A0A1D6JLA4 | InterPro:CSN1 | ncoils:Coil | GO:GO:0000338 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000717 | ProteinID:ONL92927.1 |
| InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF10602 | PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 |
| InterPro:Rpn7/CSN1 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000189CF57 | InterPro:WH_DNA-bd_sf |
| EnsemblPlantsGene:Zm00001d027359 | EnsemblPlants:Zm00001d027359_P001 | EnsemblPlants:Zm00001d027359_T001 | SEG:seg | : | : |
Description
fusca homolog
Coordinates
chr1:-:3651033..3661251
Molecular Weight (calculated)
49865.8 Da
IEP (calculated)
7.650
GRAVY (calculated)
-0.239
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVEGEVPAA AAAAVANGLG GAGAEEASPA PVSAEQLDVE AYAAQYSGRT RLVRLLFVAD RCGVEAMQLE ALRMAYDEIK RGEDVQLHRD VVTKIGGRLG
101: PRYGLDQAWV FSVSRRADQR KEKLESELNG YRTNLIKESI RMGYNDIGDF FYAHGQLSDA FKSYIRTRDY CTTSKHIVQM CMNVILVSIE LGQYAHVSNY
201: VSKAEQTPDS LDPTIVAKLK AAAGLANLET KKYKFAARKF VETGIELGNN FSEVIAPQDV AVYGALCALA SFDRSDLKSK VIDNINFRNF LELVPEVREL
301: VNDFYASRYG SCLGHLEKLK PNLLLDIHLH QHVETLYMEI RHKAIIQYTL PFISVDLNTM AAAFKTSVSM LQKELAALIT EDKIQARIDS HNKILYARHA
401: DQRNATFQRV LQTGNDFERD VKSMLLRANL LKHDYIQKTS GPRKM
101: PRYGLDQAWV FSVSRRADQR KEKLESELNG YRTNLIKESI RMGYNDIGDF FYAHGQLSDA FKSYIRTRDY CTTSKHIVQM CMNVILVSIE LGQYAHVSNY
201: VSKAEQTPDS LDPTIVAKLK AAAGLANLET KKYKFAARKF VETGIELGNN FSEVIAPQDV AVYGALCALA SFDRSDLKSK VIDNINFRNF LELVPEVREL
301: VNDFYASRYG SCLGHLEKLK PNLLLDIHLH QHVETLYMEI RHKAIIQYTL PFISVDLNTM AAAFKTSVSM LQKELAALIT EDKIQARIDS HNKILYARHA
401: DQRNATFQRV LQTGNDFERD VKSMLLRANL LKHDYIQKTS GPRKM
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.