Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023916_P001 | Maize | cytosol | 16.91 | 100.0 |
| Zm00001d020231_P001 | Maize | cytosol | 24.1 | 98.53 |
| KXG36255 | Sorghum | nucleus | 89.57 | 95.4 |
| Zm00001d004607_P001 | Maize | nucleus | 55.04 | 92.73 |
| Zm00001d006410_P013 | Maize | nucleus | 86.69 | 92.34 |
| TraesCS2D01G239100.1 | Wheat | golgi | 84.53 | 90.04 |
| TraesCS2B01G253600.2 | Wheat | nucleus | 84.53 | 90.04 |
| TraesCS2A01G228300.1 | Wheat | nucleus | 84.53 | 90.04 |
| HORVU2Hr1G050230.9 | Barley | nucleus | 82.37 | 87.74 |
| Os07t0490800-01 | Rice | cytosol, plasma membrane | 34.17 | 78.51 |
| GSMUA_Achr2P12070_001 | Banana | cytosol | 68.7 | 73.18 |
| CDX90073 | Canola | cytosol | 15.83 | 70.97 |
| GSMUA_Achr4P21630_001 | Banana | cytosol | 65.47 | 70.27 |
| VIT_15s0021g01580.t01 | Wine grape | cytosol | 63.31 | 67.95 |
| KRH13242 | Soybean | cytosol | 63.31 | 67.95 |
| KRH20583 | Soybean | cytosol | 62.59 | 67.18 |
| Solyc01g090290.2.1 | Tomato | cytosol | 59.71 | 64.09 |
| AT1G02090.1 | Thale cress | cytosol | 58.63 | 62.69 |
| CDY38053 | Canola | cytosol | 57.19 | 60.69 |
| CDY00413 | Canola | cytosol | 56.47 | 60.38 |
| Bra012303.1-P | Field mustard | nucleus | 56.47 | 60.38 |
| Bra032666.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 56.83 | 60.31 |
| Bra033219.1-P | Field mustard | cytosol | 20.5 | 60.0 |
| CDY01302 | Canola | nucleus | 55.4 | 59.23 |
| CDY15130 | Canola | extracellular | 22.66 | 56.25 |
| PGSC0003DMT400067022 | Potato | cytosol | 58.63 | 55.07 |
| KRH01071 | Soybean | nucleus | 53.6 | 53.02 |
| VIT_02s0234g00120.t01 | Wine grape | cytosol | 48.92 | 52.51 |
Protein Annotations
| EnsemblPlants:Zm00001d021522_P002 | EnsemblPlants:Zm00001d021522_T002 | EnsemblPlantsGene:Zm00001d021522 | EntrezGene:100284717 | Gene3D:1.25.40.570 | InterPro:IPR000717 |
| InterPro:PCI_dom | ncoils:Coil | PANTHER:PTHR15350 | PANTHER:PTHR15350:SF5 | PFAM:PF01399 | PFscan:PS50250 |
| ProteinID:ONM57390.1 | ProteinID:ONM57395.1 | SEG:seg | SMART:SM00088 | SMART:SM00753 | UniParc:UPI00084292FC |
| UniProt:A0A1D6IBT7 | MapMan:19.2.3.3.1.7 | : | : | : | : |
Description
COP9 signalosome complex subunit 7
Coordinates
chr7:-:155092264..155097289
Molecular Weight (calculated)
31313.7 Da
IEP (calculated)
4.855
GRAVY (calculated)
-0.182
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMDAERRQA ELIAQFSSQA VALSSAQQLA ALVLEATSHP ALFAFSELLA LPALSMLAGT QYSSSLDLLR LFAYGTLKDY KSKIVACAFA ILTLLPFADN
101: SGSLPALLPD QVRKLKQLSV LTLAESTKIL PYDQLMQELD VSNVRELEDF LINECMYSGI VRGKLDQLRR CFEVQFAAGR DLTPDQLNNM IEILSDWLGT
201: SDSLLHQIQE KIKWADTMSD VNKKHQKEFE DRVEEAKKSI KQADIDIRGH DDYLSESVGI MDFEEDRVRP KRRRQPLA
101: SGSLPALLPD QVRKLKQLSV LTLAESTKIL PYDQLMQELD VSNVRELEDF LINECMYSGI VRGKLDQLRR CFEVQFAAGR DLTPDQLNNM IEILSDWLGT
201: SDSLLHQIQE KIKWADTMSD VNKKHQKEFE DRVEEAKKSI KQADIDIRGH DDYLSESVGI MDFEEDRVRP KRRRQPLA
001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
Arabidopsis Description
CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.