Factsheet for Zm00001d005238_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002166_P004
Zm00001d002169_P006
Zm00001d002737_P002
Zm00001d004607_P001
Zm00001d006410_P013
Zm00001d020231_P001
Zm00001d020935_P002
Zm00001d021522_P002
Zm00001d023916_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	Zm00001d004607_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d006410_P013	AT1G02090.1	11029466
AT3G57290.1	Zm00001d020231_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d021522_P002	AT1G02090.1	11029466
AT3G57290.1	Zm00001d023916_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d002166_P004	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002169_P006	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002737_P002	AT3G56150.1	11029466
AT3G57290.1	Zm00001d020935_P002	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34696	Sorghum	cytosol	96.79	96.13
Zm00001d019182_P001	Maize	cytosol	93.81	93.81
Zm00001d029828_P001	Maize	cytosol	30.05	92.25
Zm00001d029511_P001	Maize	vacuole	36.47	86.89
Zm00001d040830_P001	Maize	cytosol	39.22	83.01
GSMUA_Achr7P21330_001	Banana	cytosol	81.42	80.68
TraesCS5D01G269200.1	Wheat	cytosol	80.96	80.05
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	80.96	80.05
TraesCS5A01G261900.1	Wheat	cytosol	80.96	80.05
KRH33198	Soybean	endoplasmic reticulum	76.15	75.97
KRH72039	Soybean	endoplasmic reticulum	75.69	75.51
HORVU5Hr1G072560.1	Barley	cytosol	80.05	74.26
Zm00001d020479_P005	Maize	cytosol	23.85	73.24
VIT_00s0252g00070.t01	Wine grape	cytosol	73.39	73.23
CDY19244	Canola	extracellular	7.34	72.73
AT3G57290.1	Thale cress	cytosol	72.71	71.88
PGSC0003DMT400076704	Potato	cytosol	72.02	71.69
Solyc10g079880.1.1	Tomato	cytosol, nucleus	72.02	71.69
CDX88939	Canola	cytosol	72.48	71.66
CDY30993	Canola	cytosol	72.25	71.43
CDY06117	Canola	cytosol	72.25	71.43
Bra014633.1-P	Field mustard	cytosol	72.25	71.43
Bra007317.1-P	Field mustard	cytosol	72.02	71.2
CDX72053	Canola	cytosol	71.56	70.75
Zm00001d010441_P001	Maize	cytosol	16.05	66.67
Zm00001d029554_P001	Maize	plasma membrane, plastid	37.39	61.05
Zm00001d014873_P001	Maize	plasma membrane, plastid	36.93	60.3
Zm00001d051103_P004	Maize	plasma membrane	27.75	57.35
Zm00001d020635_P001	Maize	mitochondrion	30.05	56.96
Zm00001d051050_P001	Maize	plasma membrane	40.37	47.83
Bra034326.1-P	Field mustard	cytosol	25.0	47.39
Zm00001d020588_P001	Maize	plasma membrane	17.43	42.22
Zm00001d031414_P001	Maize	cytosol	16.97	41.81
CDY70248	Canola	cytosol	27.98	41.22
CDY70454	Canola	mitochondrion	8.94	36.45
CDX79391	Canola	cytosol, extracellular, nucleus	10.55	20.72
CDY19243	Canola	cytosol	6.42	16.0

Protein Annotations

Gene3D:1.25.40.570	MapMan:17.4.1.3.5	EMBL:BT064281	UniProt:C0P7L2	GO:GO:0001731	GO:GO:0001732
GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290
GO:GO:0071540	InterPro:IPR000717	InterPro:IPR011990	HAMAP:MF_03004	ProteinID:ONM20649.1	InterPro:PCI_dom
PFAM:PF01399	PFAM:PF09440	PIRSF:PIRSF016255	PFscan:PS50250	PANTHER:PTHR10317	PANTHER:PTHR10317:SF0
SMART:SM00088	SMART:SM00753	SMART:SM01186	SUPFAM:SSF46785	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0001948FC4	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d005238	EnsemblPlants:Zm00001d005238_P001	EnsemblPlants:Zm00001d005238_T001	InterPro:eIF3e
InterPro:eIF3e_N	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit E

Coordinates

chr2:+:165152617..165157842

Molecular Weight (calculated)

51033.4 Da

IEP (calculated)

5.616

GRAVY (calculated)

-0.276

Length

436 amino acids

Sequence
(BLAST)

001: MSEHDLTALM AAQLDRHLVF PLLEFLQERQ LYSESEILEA KIRLLSGTNM VDYAMDIHKS LYGTDDVPED MVKRRAEVVS RLRSLEEAAA PLVAFLQNPQ
101: LVQEFRPDKQ YNIHMLQERY QIGPDQIEAL YQYAKFQFEC GNYSGAADYL YQYRALCTNS ERNVSALWGK LAAEILMQNW DVALEELNRL KEIIDSKNFS
201: SPLNQLQNRI WLMHWALFIF FNHENGRNGI IDLFFQDRYL NAIQTNAHHL IRYLATAVVV NKRRRNMLKE LIKVIQQEHH SYKDPVTEFL ECLYVNYDFD
301: GAQQKLIECE QVILNDPFLG KRIEEGNFVS VPLRDEFLEN ARLFIFETYC RIHRCIDISM LAQKLNMSYD EAELWIMNLV RSSKLDARID SVSGTLIMTT
401: NHVNVHEQIV ESLKGLNMRT YMLAKNIVEP AQQATR

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.