CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33198	Soybean	endoplasmic reticulum	97.94	97.94
VIT_00s0252g00070.t01	Wine grape	cytosol	89.24	89.24
GSMUA_Achr7P21330_001	Banana	cytosol	77.57	77.05
KXG34696	Sorghum	cytosol	77.12	76.77
Zm00001d029511_P001	Maize	vacuole	31.81	75.96
Zm00001d005238_P001	Maize	plasma membrane	75.51	75.69
Zm00001d019182_P001	Maize	cytosol	75.06	75.23
Os07t0222300-01	Rice	cytosol, plasma membrane	74.37	74.03
Zm00001d029828_P001	Maize	cytosol	23.8	73.24
TraesCS5D01G269200.1	Wheat	cytosol	71.17	70.52
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	71.17	70.52
TraesCS5A01G261900.1	Wheat	cytosol	71.17	70.52
CDY19244	Canola	extracellular	7.09	70.45
Zm00001d040830_P001	Maize	cytosol	32.95	69.9
Os07t0167000-01	Rice	cytosol	63.62	66.99
HORVU5Hr1G072560.1	Barley	cytosol	70.71	65.74
Os07t0503700-00	Rice	cytosol, plasma membrane	60.18	61.02
Zm00001d020479_P005	Maize	cytosol	18.08	55.63
Zm00001d029554_P001	Maize	plasma membrane, plastid	32.49	53.18
Zm00001d051103_P004	Maize	plasma membrane	25.4	52.61
Zm00001d014873_P001	Maize	plasma membrane, plastid	32.04	52.43
Bra034326.1-P	Field mustard	cytosol	27.46	52.17
Zm00001d010441_P001	Maize	cytosol	11.9	49.52
Zm00001d020635_P001	Maize	mitochondrion	25.17	47.83
CDY70248	Canola	cytosol	30.21	44.59
Zm00001d051050_P001	Maize	plasma membrane	34.55	41.03
CDY70454	Canola	mitochondrion	9.61	39.25
Zm00001d031414_P001	Maize	cytosol	15.33	37.85
Zm00001d020588_P001	Maize	plasma membrane	14.42	35.0
CDX79391	Canola	cytosol, extracellular, nucleus	12.59	24.77
CDY19243	Canola	cytosol	7.55	18.86

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100797748	MapMan:17.4.1.3.5	EMBL:ACUP02001155	EnsemblPlantsGene:GLYMA_02G187100	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0033290	GO:GO:0071540	UniProt:I1JGB5	InterPro:IPR000717	EnsemblPlants:KRH72039	ProteinID:KRH72039
ProteinID:KRH72039.1	HAMAP:MF_03004	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF09440	PIRSF:PIRSF016255
PFscan:PS50250	PANTHER:PTHR10317	PANTHER:PTHR10317:SF0	SMART:SM00088	SMART:SM00753	SMART:SM01186
SUPFAM:SSF46785	UniParc:UPI0001BA8713	InterPro:WH_DNA-bd_sf	InterPro:eIF3e	InterPro:eIF3e_N	:

Description

hypothetical protein

Coordinates

chr2:+:34507170..34510997

Molecular Weight (calculated)

51163.0 Da

IEP (calculated)

5.618

GRAVY (calculated)

-0.398

Length

437 amino acids

Sequence
(BLAST)

001: MAEYDLTPRM APNLDRHLVF PLLEFLQERQ LYDDNHILKA KIDLLNNTNM VDYAMDIHKS LYHTEEVPHD MVDRRAEVVA RLKSLEEAAA PLVAFLQNAA
101: AVQELRADKQ YNLQMLNDRY QIGPAQIEAL YQYSKFQFEC GNYSGAADYL YQYRALCTNS ERSLSALWGK LAAEILMQNW DIALEELNRL KEIIDSKNFA
201: SPLNQVQSRI WLMHWSLFIF FNHDNGRTQI IDLFNQDKYL NAIQTSAPHL LRYLATAFIV NKRRRPQFKD FIKVIQQEQH SYTDPITEFL ACVYVNYDFD
301: GAQKKMRECE EVILNDPFLG KRVEESNFST VPLRDEFLEN ARLFIFETYC RIHQRIDMGV LAEKLNLNYE EAERWIVNLI RSSKLDAKID SETGTVIMEP
401: NHPNVYEQLI DHTKALNGRT YKLVSQLLEH AQAQTAR

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.