Factsheet for Zm00001d040830_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002166_P004
Zm00001d002169_P006
Zm00001d002737_P002
Zm00001d004607_P001
Zm00001d006410_P013
Zm00001d020231_P001
Zm00001d020935_P002
Zm00001d021522_P002
Zm00001d023916_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	Zm00001d004607_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d006410_P013	AT1G02090.1	11029466
AT3G57290.1	Zm00001d020231_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d021522_P002	AT1G02090.1	11029466
AT3G57290.1	Zm00001d023916_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d002166_P004	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002169_P006	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002737_P002	AT3G56150.1	11029466
AT3G57290.1	Zm00001d020935_P002	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19244	Canola	extracellular	13.59	63.64
Zm00001d029828_P001	Maize	cytosol	33.98	49.3
Zm00001d029511_P001	Maize	vacuole	36.89	41.53
Zm00001d005238_P001	Maize	plasma membrane	83.01	39.22
Zm00001d019182_P001	Maize	cytosol	78.64	37.16
Zm00001d051103_P004	Maize	plasma membrane	37.86	36.97
Zm00001d031414_P001	Maize	cytosol	31.07	36.16
GSMUA_Achr7P21330_001	Banana	cytosol	70.39	32.95
KRH72039	Soybean	endoplasmic reticulum	69.9	32.95
KRH33198	Soybean	endoplasmic reticulum	69.9	32.95
VIT_00s0252g00070.t01	Wine grape	cytosol	68.45	32.27
TraesCS5D01G269200.1	Wheat	cytosol	67.48	31.52
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	67.48	31.52
TraesCS5A01G261900.1	Wheat	cytosol	67.48	31.52
Solyc10g079880.1.1	Tomato	cytosol, nucleus	66.99	31.51
PGSC0003DMT400076704	Potato	cytosol	66.99	31.51
Bra034326.1-P	Field mustard	cytosol	34.95	31.3
CDY30993	Canola	cytosol	66.02	30.84
CDX88939	Canola	cytosol	66.02	30.84
Bra014633.1-P	Field mustard	cytosol	66.02	30.84
AT3G57290.1	Thale cress	cytosol	65.53	30.61
Bra007317.1-P	Field mustard	cytosol	65.53	30.61
CDY06117	Canola	cytosol	65.53	30.61
CDX72053	Canola	cytosol	65.53	30.61
Zm00001d029554_P001	Maize	plasma membrane, plastid	38.35	29.59
HORVU5Hr1G072560.1	Barley	cytosol	67.48	29.57
Zm00001d014873_P001	Maize	plasma membrane, plastid	37.86	29.21
Zm00001d020479_P005	Maize	cytosol	17.96	26.06
CDY70248	Canola	cytosol	35.92	25.0
Zm00001d051050_P001	Maize	plasma membrane	43.2	24.18
Zm00001d020635_P001	Maize	mitochondrion	24.27	21.74
CDY70454	Canola	mitochondrion	10.68	20.56
Zm00001d020588_P001	Maize	plasma membrane	12.62	14.44
CDX79391	Canola	cytosol, extracellular, nucleus	15.53	14.41
Zm00001d010441_P001	Maize	cytosol	5.83	11.43
CDY19243	Canola	cytosol	6.31	7.43

Protein Annotations

MapMan:35.1	UniProt:A0A1D6MT70	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	ProteinID:ONM32104.1	PFAM:PF09440	PANTHER:PTHR10317
SMART:SM01186	UniParc:UPI0008429240	EnsemblPlantsGene:Zm00001d040830	EnsemblPlants:Zm00001d040830_P001	EnsemblPlants:Zm00001d040830_T001	InterPro:eIF3e
InterPro:eIF3e_N	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit E

Coordinates

chr3:+:68299131..68300672

Molecular Weight (calculated)

23869.8 Da

IEP (calculated)

6.159

GRAVY (calculated)

-0.236

Length

206 amino acids

Sequence
(BLAST)

001: MHEPAKSTGK GKAQLDRHLV FPLLEFLQER QFYSESEILE AKIRLLNGTN MVDYAMDIHK SLYDTDDVLE DMVKRRAEVV SRLRSLEEAA APLVAFLQNP
101: LVAPFSERNV SALWGKLAAE ILMQNWDVAL EELNCLKEII DSKNFSSPLN QLQNRIWLMH WAMFIFFNHE NGRNGIIDPF FQDRYLNAMQ TNAHHLIRST
201: IATRIP

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.