Factsheet for PGSC0003DMT400076704

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400046928
PGSC0003DMT400067022
PGSC0003DMT400078176

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	PGSC0003DMT400067022	AT1G02090.1	11029466
AT3G57290.1	PGSC0003DMT400046928	AT3G56150.1	11029466
AT3G57290.1	PGSC0003DMT400078176	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079880.1.1	Tomato	cytosol, nucleus	98.86	98.86
Bra007317.1-P	Field mustard	cytosol	83.56	82.99
CDY06117	Canola	cytosol	83.56	82.99
AT3G57290.1	Thale cress	cytosol	83.56	82.99
CDX88939	Canola	cytosol	83.33	82.77
Bra014633.1-P	Field mustard	cytosol	83.11	82.54
CDX72053	Canola	cytosol	82.65	82.09
CDY30993	Canola	cytosol	82.65	82.09
Zm00001d029511_P001	Maize	vacuole	32.19	77.05
GSMUA_Achr7P21330_001	Banana	cytosol	73.97	73.64
Zm00001d005238_P001	Maize	plasma membrane	71.69	72.02
KXG34696	Sorghum	cytosol	72.15	71.98
Zm00001d029828_P001	Maize	cytosol	23.29	71.83
Zm00001d019182_P001	Maize	cytosol	70.32	70.64
Os07t0222300-01	Rice	cytosol, plasma membrane	69.18	69.02
Zm00001d040830_P001	Maize	cytosol	31.51	66.99
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	67.35	66.89
TraesCS5D01G269200.1	Wheat	cytosol	67.35	66.89
TraesCS5A01G261900.1	Wheat	cytosol	67.35	66.89
Os07t0167000-01	Rice	cytosol	60.5	63.86
HORVU5Hr1G072560.1	Barley	cytosol	66.44	61.91
Os07t0503700-00	Rice	cytosol, plasma membrane	57.99	58.93
Zm00001d029554_P001	Maize	plasma membrane, plastid	33.1	54.31
Zm00001d020479_P005	Maize	cytosol	17.58	54.23
Zm00001d051103_P004	Maize	plasma membrane	26.03	54.03
Zm00001d014873_P001	Maize	plasma membrane, plastid	32.65	53.56
Zm00001d020635_P001	Maize	mitochondrion	25.34	48.26
Zm00001d010441_P001	Maize	cytosol	11.19	46.67
Zm00001d051050_P001	Maize	plasma membrane	35.39	42.12
Zm00001d031414_P001	Maize	cytosol	14.84	36.72
Zm00001d020588_P001	Maize	plasma membrane	13.7	33.33

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:102606100	MapMan:17.4.1.3.5	ncoils:Coil	GO:GO:0000003	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0005852	GO:GO:0005886	GO:GO:0006412	GO:GO:0006413
GO:GO:0006446	GO:GO:0006950	GO:GO:0007275	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009651	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016282	GO:GO:0017148	GO:GO:0019538
GO:GO:0030371	GO:GO:0031597	GO:GO:0033290	GO:GO:0045182	GO:GO:0071540	InterPro:IPR000717
UniProt:M1CX90	HAMAP:MF_03004	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF09440	EnsemblPlantsGene:PGSC0003DMG400029829
PGSC:PGSC0003DMG400029829	EnsemblPlants:PGSC0003DMT400076704	PIRSF:PIRSF016255	PFscan:PS50250	PANTHER:PTHR10317	PANTHER:PTHR10317:SF0
SMART:SM00088	SMART:SM00753	SMART:SM01186	SUPFAM:SSF46785	UniParc:UPI0002963351	InterPro:WH_DNA-bd_sf
RefSeq:XP_006351291.1	InterPro:eIF3e	InterPro:eIF3e_N	SEG:seg	:	:

Description

Eukaryotic initiation factor 3E subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400029829]

Coordinates

chr10:+:57966927..57971144

Molecular Weight (calculated)

51111.2 Da

IEP (calculated)

5.233

GRAVY (calculated)

-0.346

Length

438 amino acids

Sequence
(BLAST)

001: MASKYDLTPR IAQQLDIHLI FPLLEFLQEQ GLYPDEYILK AKIELLNHTN MVDYAMDIHK SLYHTDDVPQ EMMERRAEVV ARLKALEEAA APLITFLQNS
101: SAVQELRADK QHNLQLLQER YQIGPDQIEA LYQYAKFQFE CGNYSGAADY LYQYRALCTN SDRSVSALWG KLAAEILMQN WDIALEELNR LKEIIDSKSF
201: STPLNQVQNR IWLMHWSLFI FFNHDNGRTL IIDLFNQDKY LNAIQTSAPH LLRYLAIAFI VNKRRRPQFK DFIKVIQQEQ HSCKDPITEF LACIYVNYDF
301: DGAQEKMKEC EELILNDPFL GKRAEDGSFS SVLLRDEFLE NARLFISETY CRIHQRIDMG VLAEKLNLNL EEAERWIVNL IRTSKLDAKI DTETGTVTME
401: PNQPNVYEQL IDHTKPLSGR TYKLVSQLLE HAQTQLAR

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.