Factsheet for Zm00001d020635_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plasma membrane, plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002166_P004
Zm00001d002169_P006
Zm00001d002737_P002
Zm00001d004607_P001
Zm00001d006410_P013
Zm00001d020231_P001
Zm00001d020935_P002
Zm00001d021522_P002
Zm00001d023916_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	Zm00001d004607_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d006410_P013	AT1G02090.1	11029466
AT3G57290.1	Zm00001d020231_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d021522_P002	AT1G02090.1	11029466
AT3G57290.1	Zm00001d023916_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d002166_P004	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002169_P006	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002737_P002	AT3G56150.1	11029466
AT3G57290.1	Zm00001d020935_P002	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029511_P001	Maize	vacuole	56.09	70.49
Zm00001d029828_P001	Maize	cytosol	35.22	57.04
Zm00001d029554_P001	Maize	plasma membrane, plastid	59.57	51.31
Zm00001d014873_P001	Maize	plasma membrane, plastid	58.7	50.56
Zm00001d010441_P001	Maize	cytosol	23.04	50.48
Zm00001d020479_P005	Maize	cytosol	29.57	47.89
Zm00001d051050_P001	Maize	plasma membrane	75.22	47.01
Zm00001d020588_P001	Maize	plasma membrane	29.57	37.78
Zm00001d051103_P004	Maize	plasma membrane	32.61	35.55
Zm00001d005238_P001	Maize	plasma membrane	56.96	30.05
Zm00001d019182_P001	Maize	cytosol	54.35	28.67
GSMUA_Achr7P21330_001	Banana	cytosol	53.48	27.95
TraesCS5D01G269200.1	Wheat	cytosol	49.57	25.85
TraesCS5A01G261900.1	Wheat	cytosol	49.57	25.85
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	49.57	25.85
KRH33198	Soybean	endoplasmic reticulum	48.7	25.63
AT3G57290.1	Thale cress	cytosol	49.13	25.62
PGSC0003DMT400076704	Potato	cytosol	48.26	25.34
VIT_00s0252g00070.t01	Wine grape	cytosol	47.83	25.17
KRH72039	Soybean	endoplasmic reticulum	47.83	25.17
Solyc10g079880.1.1	Tomato	cytosol, nucleus	47.83	25.11
CDY06117	Canola	cytosol	47.83	24.94
CDX72053	Canola	cytosol	47.83	24.94
Bra007317.1-P	Field mustard	cytosol	47.83	24.94
CDY30993	Canola	cytosol	47.39	24.72
CDX88939	Canola	cytosol	47.39	24.72
Bra014633.1-P	Field mustard	cytosol	47.39	24.72
Zm00001d040830_P001	Maize	cytosol	21.74	24.27
HORVU5Hr1G072560.1	Barley	cytosol	49.57	24.26
Zm00001d031414_P001	Maize	cytosol	15.65	20.34
Bra034326.1-P	Field mustard	cytosol	15.22	15.22
CDY70248	Canola	cytosol	15.22	11.82
CDY70454	Canola	mitochondrion	3.91	8.41
CDY19243	Canola	cytosol	6.09	8.0
CDX79391	Canola	cytosol, extracellular, nucleus	4.78	4.95
CDY19244	Canola	extracellular	0.0	0.0

Protein Annotations

Gene3D:1.10.3080.10	MapMan:35.1	UniProt:A0A1D6I5B0	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005215	GO:GO:0005216	GO:GO:0005247
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0006810	GO:GO:0006821	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538
GO:GO:0034220	GO:GO:0055085	GO:GO:1902476	InterPro:IPR014743	ProteinID:ONM55301.1	PFAM:PF00654
PANTHER:PTHR10317	PANTHER:PTHR10317:SF0	SUPFAM:SSF81340	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0008452381
EnsemblPlantsGene:Zm00001d020635	EnsemblPlants:Zm00001d020635_P001	EnsemblPlants:Zm00001d020635_T001	InterPro:eIF3e	SEG:seg	:

Description

Eukaryotic translation initiation factor 3 subunit E

Coordinates

chr7:+:125801060..125806226

Molecular Weight (calculated)

26135.1 Da

IEP (calculated)

8.901

GRAVY (calculated)

0.120

Length

230 amino acids

Sequence
(BLAST)

001: MAAPSLSRGG CRRHLTLVLA ELALSPVVPL PAEANTPSPR PSLLDSPIPG LPRLRPHLLP MVGMAATLAS VCSVPLTSVL LLFELTKDYR ILLPLMIGPD
101: HIEALYQYAK FQFECGNYSG AADYLYQYGA LCTNSERNNF SSPLNQLQNR IWLMHWALFI FFNHIRYLNA IQTNAHHLIR YLATSVVVNK RRRNMLKELI
201: KVIQQEHHTY KDPITEFLEC LYVNYVVVGF

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.