Factsheet for Zm00001d020935_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003685_P001
Zm00001d005238_P001
Zm00001d010441_P001
Zm00001d014873_P001
Zm00001d019182_P001
Zm00001d020479_P005
Zm00001d020588_P001
Zm00001d020635_P001
Zm00001d025407_P001
Zm00001d027359_P001
Zm00001d029511_P001
Zm00001d029554_P001
Zm00001d029828_P001
Zm00001d030011_P001
Zm00001d031414_P001
Zm00001d037950_P004
Zm00001d037951_P001
Zm00001d040830_P001
Zm00001d048502_P002
Zm00001d051050_P001
Zm00001d051103_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	Zm00001d037950_P004	AT1G50030.1	23524850
AT3G56150.1	Zm00001d037951_P001	AT1G50030.1	23524850
AT3G56150.1	Zm00001d005238_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d010441_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d014873_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d019182_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d020479_P005	AT3G57290.1	11029466
AT3G56150.1	Zm00001d020588_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d020635_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d029511_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d029554_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d029828_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d031414_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d040830_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d051050_P001	AT3G57290.1	11029466
AT3G56150.1	Zm00001d051103_P004	AT3G57290.1	11029466
AT3G56150.1	Zm00001d027359_P001	AT3G61140.1	11029466
AT3G56150.1	Zm00001d048502_P002	AT3G61140.1	11029466
AT3G56150.1	Zm00001d003685_P001	AT4G14110.1	11029466
AT3G56150.1	Zm00001d025407_P001	AT4G14110.1	11029466
AT3G56150.1	Zm00001d030011_P001	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35906	Sorghum	cytosol	90.28	79.64
Zm00001d002169_P006	Maize	cytosol	89.79	79.46
Zm00001d002166_P004	Maize	cytosol	89.79	79.46
HORVU2Hr1G058390.1	Barley	cytosol	15.43	77.91
Zm00001d002737_P002	Maize	vacuole	87.48	74.3
HORVU2Hr1G058370.1	Barley	cytosol	16.16	73.08
Os07t0124500-01	Rice	nucleus	81.05	71.26
TraesCS5A01G220000.1	Wheat	nucleus	77.4	68.64
TraesCS5D01G228100.1	Wheat	golgi, unclear	77.16	68.43
TraesCS5B01G219100.1	Wheat	nucleus	77.04	68.32
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	5.22	68.25
HORVU5Hr1G063770.2	Barley	nucleus	76.55	67.96
VIT_16s0039g01140.t01	Wine grape	cytosol	6.8	67.47
TraesCS5B01G410800.1	Wheat	cytosol	75.58	67.03
TraesCS5A01G406000.1	Wheat	cytosol	75.09	66.96
TraesCS5D01G416000.1	Wheat	cytosol	74.73	66.34
HORVU5Hr1G098600.1	Barley	cytosol	74.24	65.91
GSMUA_Achr3P04920_001	Banana	cytosol	68.29	63.0
Solyc01g102570.2.1	Tomato	cytosol, nucleus	27.22	62.92
Solyc01g102600.2.1	Tomato	cytosol	27.1	62.47
CDY65406	Canola	cytosol	58.81	59.46
VIT_08s0007g07180.t01	Wine grape	cytosol	67.68	58.88
CDY16358	Canola	cytosol	58.93	58.15
CDX72169	Canola	cytosol	58.81	58.03
KRH41811	Soybean	cytosol	65.13	57.88
KRH60516	Soybean	endoplasmic reticulum	64.88	57.73
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	63.3	57.63
PGSC0003DMT400078176	Potato	cytosol	63.79	57.44
KRH68073	Soybean	endoplasmic reticulum	64.52	57.34
Bra022520.1-P	Field mustard	cytosol	59.78	56.88
CDY27241	Canola	cytosol	59.66	56.63
CDY06037	Canola	cytosol	49.94	56.3
PGSC0003DMT400046928	Potato	cytosol	63.06	56.29
AT3G56150.1	Thale cress	cytosol	61.24	56.0
Bra007220.1-P	Field mustard	cytosol	59.66	54.86
Bra007396.1-P	Field mustard	cytosol, mitochondrion	53.46	53.27
CDX71953	Canola	cytosol	52.61	52.8
AT3G22860.1	Thale cress	cytosol	50.06	51.18
Solyc01g102560.2.1	Tomato	nucleus	15.43	40.97
Solyc01g102590.2.1	Tomato	nucleus	18.23	36.59

Protein Annotations

MapMan:17.4.1.3.3	UniProt:A0A1D6I6Y8	ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0031369	GO:GO:0033290	InterPro:IPR000717	HAMAP:MF_03002	ProteinID:ONM55832.1	InterPro:PCI_dom
PFAM:PF01399	PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	UniParc:UPI000842A2EF	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d020935	EnsemblPlants:Zm00001d020935_P002	EnsemblPlants:Zm00001d020935_T002
SEG:seg	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit C

Coordinates

chr7:-:137126539..137129617

Molecular Weight (calculated)

94949.8 Da

IEP (calculated)

5.291

GRAVY (calculated)

-0.665

Length

823 amino acids

Sequence
(BLAST)

001: MTSRFWGQGD SESEEEEEVK PEQGSNSDDD GGRDGAGRSA QNRYLKNQED DSDESDTGHR VIRSLKDKHN EEMKYIVDQM RNAMKINDWV SLHESFEKLS
101: KHLEKVVRVN ESTEVPKMYI KALVLLEDFL AGALANKEAR KKMSNSNAKA LNAMKQKLKK NNKQYEEQIQ KCREHPEGFE DEAVDDKDTH DDDDDDVDES
201: DAEIEDPDKI AMSESEEERD EDDDHKDGWE QKRSKKDNLM DKQFLKDPSE ITWDIVDKKL KEIVASRGKK GTGRIERVEQ LTFLTRVAKT PAQKLEILFH
301: VISAQFDVNP SLLGHMPVNM WKKCVNNMLL VLDILEQYPN IVVDISFEPD EKETQKGVDY DGTIHVVSDL VAFLERLDSE FFKTLQCTDP YTKDYVQRLR
401: EEPLFLVVAQ NVQGYLERVG NLKSAAKVAL RRVELVYYKP QEVYDAMRKL AEQPEDTVDN DDAEAGDEHQ ATDDNRGPSP FVVIPEVVRR KPTFPESART
501: LMDGLLSLIY KYGDERTKAR AMLCDIYHHA ISDEFSVARD LLLMSHLQDG IQLMDISSQI LFNRVMAQLG LCAFRAGLIN EAHDCLTELY STGRVKELLA
601: QGLQQSRFHE KTPEQERLER RRQMPYHMHI NLELLEATHL ICAMLIEVPN MASSTYDKRR PMSKTFRRLL EVSERQTFVG PPENVRDHVM AATRALNKGD
701: HQKAFSVINS LEIWKLLRNR EHVLEMLEVK VKEEALRTYL LSCSSCFSSL SLNQLTTVFD LNEQHAYRII SKMMMHEELH ASWYQPTKSI IFHSLDQSRL
801: KVILLKMANK MANKVESRRA VPA

Best Arabidopsis Sequence Match ( AT3G22860.1 )
(BLAST)

001: MTTTSRFFAQ SGSESEDESD FEKEEVEGNN TRYLADLPDG EICCGMDTKR VVKPKKDKRF EEMANTIENM KHAMNINDCV YLQETFEKLN KQISKSVKTP
101: TLYIKTLVML EDFLNEDNMK TKEKMSTSNS KALNAMRQKL KKNNLQYQED IKRFRESPEI EDDDEYEEEV VEDSADNVSW EMLFSLDHEE ITWNMVNKKF
201: KEIRAARWSK RRSSSLKLKP GETHAQKHMD LTKIAKTPAQ KVEILFSVIS AEFNVNSGGL SGYMPIDVWK KCVVNMLTIL DILVKYYNIV VDDTVEPDEK
301: ETSKPAAYDG TIRVSGNLVA FLEKIETEFF KSLQCIDPHT NDYVERLKDE PMFLALAQSI QDYLERTGDS KAASKVAFIL VESIYYKPQE VFDAMSKLAD
401: EEIEEANEES GSSSSSFIVV AEIVPRKPTF AKSSRAMMDT LVSFIYKNGD ERTKARAMLC DIYQHALMDN FVTARDLLLM SHLQENIQHM DISTQILFNR
501: TMAQLGLCAF RVGMITESHS CLSELYSGNR VRELLGQGVS QSRDHEKTTE QMLMERRTQI PYHMNINLEL LEAVYLTCAM LLEVPNMAAN SHDSKHKPIS
601: KNIQRLLEKS EKQAFTAPPE NVRVHVIAAT RALIKGNFQE AFSVLNSLDI WRLFKNRDSI LDMVKASISE VALRTYLFTY SSSCYKSLSL AELAKMFDIS
701: ESHVYSIVSK MMINKELNAT WDQPTQCIVF HEVQHNRAQS LAFQITEKLA TLAESNESAM ESKTGGVGLD MTSRRRENSQ DYAAAASDNR GLKMDGSSLT
801: RGVSA

Arabidopsis Description

TIF3C2Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/TrEMBL;Acc:F4J1N5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.