Factsheet for Solyc06g076150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g088370.2.1
Solyc01g091650.2.1
Solyc01g104600.2.1
Solyc01g106840.1.1
Solyc10g079880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	Solyc01g106840.1.1	AT1G50030.1	23524850
AT3G56150.1	Solyc10g079880.1.1	AT3G57290.1	11029466
AT3G56150.1	Solyc01g091650.2.1	AT3G61140.1	11029466
AT3G56150.1	Solyc01g104600.2.1	AT4G14110.1	11029466
AT3G56150.1	Solyc01g088370.2.1	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078176	Potato	cytosol	95.46	94.42
Solyc01g102570.2.1	Tomato	cytosol, nucleus	31.08	78.93
Solyc01g102600.2.1	Tomato	cytosol	31.08	78.71
VIT_16s0039g01140.t01	Wine grape	cytosol	7.08	77.11
Solyc01g102560.2.1	Tomato	nucleus	25.22	73.55
CDY65406	Canola	cytosol	64.16	71.25
CDX72169	Canola	cytosol	65.27	70.74
CDY16358	Canola	cytosol	65.04	70.5
VIT_08s0007g07180.t01	Wine grape	cytosol	73.01	69.77
KRH68073	Soybean	endoplasmic reticulum	69.91	68.25
Bra022520.1-P	Field mustard	cytosol	65.27	68.21
CDY27241	Canola	cytosol	65.27	68.05
KRH60516	Soybean	endoplasmic reticulum	68.92	67.35
KRH41811	Soybean	cytosol	68.81	67.17
GSMUA_Achr3P04920_001	Banana	cytosol	66.26	67.15
AT3G56150.1	Thale cress	cytosol	66.81	67.11
CDY06037	Canola	cytosol	53.54	66.3
HORVU2Hr1G058390.1	Barley	cytosol	11.95	66.26
Bra007220.1-P	Field mustard	cytosol	65.6	66.26
Zm00001d002169_P006	Maize	cytosol	65.82	63.98
KXG35906	Sorghum	cytosol	65.82	63.77
Zm00001d002166_P004	Maize	cytosol	65.6	63.76
Os07t0124500-01	Rice	nucleus	65.82	63.57
Bra007396.1-P	Field mustard	cytosol, mitochondrion	57.96	63.44
Zm00001d020935_P002	Maize	cytosol	57.63	63.3
HORVU2Hr1G058370.1	Barley	cytosol	12.61	62.64
HORVU5Hr1G063770.2	Barley	nucleus	63.94	62.35
TraesCS5A01G220000.1	Wheat	nucleus	63.94	62.28
CDX71953	Canola	cytosol	56.42	62.2
TraesCS5D01G228100.1	Wheat	golgi, unclear	63.83	62.18
TraesCS5B01G219100.1	Wheat	nucleus	63.72	62.07
TraesCS5B01G410800.1	Wheat	cytosol	63.5	61.85
Solyc01g102590.2.1	Tomato	nucleus	27.77	61.22
TraesCS5A01G406000.1	Wheat	cytosol	62.39	61.11
TraesCS5D01G416000.1	Wheat	cytosol	62.5	60.95
HORVU5Hr1G098600.1	Barley	cytosol	62.06	60.52
AT3G22860.1	Thale cress	cytosol	53.54	60.12
Zm00001d002737_P002	Maize	vacuole	62.94	58.72
EES13928	Sorghum	cytosol	53.1	53.63
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	3.65	52.38

Protein Annotations

Gene3D:1.10.10.10	MapMan:17.4.1.3.3	ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0031369	GO:GO:0033290	InterPro:IPR000717	InterPro:IPR036388	UniProt:K4C9X5	HAMAP:MF_03002
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc06g076150.2	EnsemblPlants:Solyc06g076150.2.1	UniParc:UPI0002766F2E	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/TrEMBL;Acc:K4C9X5]

Coordinates

chr6:-:47277391..47281462

Molecular Weight (calculated)

102606.0 Da

IEP (calculated)

5.434

GRAVY (calculated)

-0.608

Length

904 amino acids

Sequence
(BLAST)

001: MASRFWTQGD SETEEEEESD YEQQDDEPAE TTKTDGGSRY LAADDSDSDE SDGQKRVVRS AKDKRFDELS ATVDQMKNAM KINDWVSLQE TFDKINKQLE
101: KVMRITEAVR APNLYIKSLV MLEDFLTQAL ANKEAKKKMS SSNAKALNSM KQKLKKNNKQ YEELINKYRE NPPVSEDEGG DDEESEEEFE EDPTKIAVAP
201: NDDTNRSLDP ANEWEIILNK KDKLMDKQFK DPSQITWDIV NKKFKEIVAS RGRKGTGRIE LVEQLTFLTK VAKTPAQKLE ILFSIVSAQF DVNPSLSGHM
301: PVNVWKKCVQ NVLTILDMLT QYPNIVVDDM VEPDENETQK GSDYTGTIRI WGNLVAFVEK IDIEFFKSLQ VIDPHTREYV ERLRDEPLFL VLAQNVQDYL
401: VRVGDSRAAA KVALKQVEFI YYKPPEVYDA MRKLAELAEG EGEGESADEN KVAEESKGPL AFVPTPELVP RKPSFEEDSR SLMDVLVSLI YKHGDERTKA
501: RAMLCDIYNH ALFDEFSVSR DLLLMSHLQD NIQHMDISTQ ILFNRAMAQL GLCAFRAGLI TEAQGCLSEL YSAGRVKELL AQGVSQSRYH EKTPEQERIE
601: RRRQMPYHMH INLELLEAVH LICAMLLEVP NMATNSHDTR RKVISKNFQR LLEISERQTF TGPPENVRDH VMAATRALKQ GDFLKAFDVI KSLDMWRLFK
701: NKESVLEMVR AKIKEEALRT YLFTYSSTYN SLSLDQLAGM FDLSDKQVHS IVSKMIISEE LHANWDQPTR CVVFHDVAHT RLQGLAFQLT EKLAILSETN
801: ERAMESRIGG GLEGLPPRRR EGQDYAAAAA GGAGNKWQEF SFSQGRQGSS GGRTGYNAGR FASSRDRTGQ ARTHGGRYQT NAAAKGGHNM DGSRMVNLNR
901: GIRA

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.