Factsheet for Bra007396.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06037	Canola	cytosol	82.2	93.01
Bra022520.1-P	Field mustard	cytosol	69.49	66.36
Bra007220.1-P	Field mustard	cytosol	70.22	64.8
VIT_16s0039g01140.t01	Wine grape	cytosol	6.05	60.24
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	63.44	57.96
PGSC0003DMT400078176	Potato	cytosol	63.56	57.44
KRH60516	Soybean	endoplasmic reticulum	63.08	56.32
KRH41811	Soybean	cytosol	62.95	56.16
KRH68073	Soybean	endoplasmic reticulum	62.59	55.83
PGSC0003DMT400046928	Potato	cytosol	61.74	55.31
GSMUA_Achr3P04920_001	Banana	cytosol	58.35	54.04
Zm00001d020935_P002	Maize	cytosol	53.27	53.46
Os07t0124500-01	Rice	nucleus	59.2	52.24
Solyc01g102560.2.1	Tomato	nucleus	19.49	51.94
Zm00001d002169_P006	Maize	cytosol	57.87	51.4
KXG35906	Sorghum	cytosol	57.99	51.34
Zm00001d002166_P004	Maize	cytosol	57.63	51.18
TraesCS5A01G220000.1	Wheat	nucleus	57.38	51.08
TraesCS5D01G228100.1	Wheat	golgi, unclear	57.26	50.97
TraesCS5B01G219100.1	Wheat	nucleus	57.14	50.86
HORVU5Hr1G063770.2	Barley	nucleus	57.02	50.81
TraesCS5D01G416000.1	Wheat	cytosol	57.02	50.81
TraesCS5A01G406000.1	Wheat	cytosol	56.54	50.6
TraesCS5B01G410800.1	Wheat	cytosol	56.42	50.22
HORVU5Hr1G098600.1	Barley	cytosol	56.17	50.05
Solyc01g102570.2.1	Tomato	cytosol, nucleus	21.55	50.0
Solyc01g102600.2.1	Tomato	cytosol	21.55	49.86
Zm00001d002737_P002	Maize	vacuole	56.3	47.99
HORVU2Hr1G058390.1	Barley	cytosol	9.32	47.24
EES13928	Sorghum	cytosol	50.12	46.26
Solyc01g102590.2.1	Tomato	nucleus	21.67	43.66
HORVU2Hr1G058370.1	Barley	cytosol	9.56	43.41
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	3.03	39.68

Protein Annotations

Gene3D:1.25.40.570	MapMan:17.4.1.3.3	EnsemblPlantsGene:Bra007396	EnsemblPlants:Bra007396.1	EnsemblPlants:Bra007396.1-P	ncoils:Coil
InterPro:EIF3C	InterPro:EIF3C_N_dom	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	InterPro:IPR000717
UniProt:M4CT54	HAMAP:MF_03002	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250
PANTHER:PTHR13937	PANTHER:PTHR13937:SF0	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0002542DD8
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

AT3G56150 (E=1e-161) EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF3C1 | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C); translation initiation factor

Coordinates

chrA09:+:28988273..28992836

Molecular Weight (calculated)

94218.7 Da

IEP (calculated)

6.699

GRAVY (calculated)

-0.546

Length

826 amino acids

Sequence
(BLAST)

001: MKRIDSHKGT KSYQLAERLH SRWSTGAGPS ISCMRDYPSE LQFRVLEQAQ PSPRASSFSN PSPFAPPGSE SDNGSSTEEE LDEVQDTNTA GGASRYLPGG
101: SDTDDGDLPK RVVQPGKDKR FEEMVHTAEQ MKHAMNVNNW VSLLENFDKI NKQLEKVMRI KEAVKAPVLY IKTLVMLEDF LNETTLEAKN EMSHSNSKAL
201: NSMRQRLKKN NKMYEEEINK YRESSETEEA KVSEEELCNK DPKEITWEWI NQKLKEVVSA RGRKGTARSE LIDQLTHLMR LAKTPAQKLE ILFGLVSAQF
301: DVNPGLSGHM PIDVWKKCVN NMFTILDVLV KYDNIVVDDA VEPDENETSR PEDYDGKIRV WGNLVAFVER IDTEFFKSLQ SVDPHAREYV ERLRDEPMLL
401: ALAQNIQVYF ERCGDFKSAA KVALRRVESV YYKPQEVYDA MRKLAEQEDD STGPVVPRKP TFAESSRAMM DGLVSLIYKY GDERTKARAI LCDIYHHSLM
501: DKFGTARDLL LMSHLQDNVQ HMDMSTQILF NRSMAQLGLC AFRVGMFTEA QSCLSELCSG QRARELLAQG VSQSRKEKTP EQERLERRRQ MPYHMHINLE
601: LLEAVHLICA MLLEVPNMSA NSHDARRKVI SKNLRRLIEI SERQAFTAPP ENVRDHVMAA TRALTKGDFE KAVEVLSSLD IWKLLKNRET VLDMVKARVK
701: EEALKTYLLT YSASYESLRL DHLAKMFGLS ENQVHSIVSK MMISEELHAY WDQPTHCILF HDVQHNRLQT LAFKLIEKLA VLAESNERAM EARTGGYGGR
801: GGGTENRGMQ MDGTSPMVSL NRVVRA

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.