Factsheet for Solyc01g102590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g088370.2.1
Solyc01g091650.2.1
Solyc01g104600.2.1
Solyc01g106840.1.1
Solyc10g079880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	Solyc01g106840.1.1	AT1G50030.1	23524850
AT3G56150.1	Solyc10g079880.1.1	AT3G57290.1	11029466
AT3G56150.1	Solyc01g091650.2.1	AT3G61140.1	11029466
AT3G56150.1	Solyc01g104600.2.1	AT4G14110.1	11029466
AT3G56150.1	Solyc01g088370.2.1	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g102560.2.1	Tomato	nucleus	73.66	97.42
PGSC0003DMT400046928	Potato	cytosol	79.02	35.14
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	61.22	27.77
CDY65406	Canola	cytosol	51.71	26.04
CDX72169	Canola	cytosol	51.46	25.3
CDY16358	Canola	cytosol	51.22	25.18
KRH68073	Soybean	endoplasmic reticulum	56.59	25.05
KRH41811	Soybean	cytosol	56.34	24.95
CDY06037	Canola	cytosol	44.15	24.79
KRH60516	Soybean	endoplasmic reticulum	55.85	24.76
Bra007220.1-P	Field mustard	cytosol	53.66	24.58
AT3G56150.1	Thale cress	cytosol	53.9	24.56
CDY27241	Canola	cytosol	51.46	24.34
Bra022520.1-P	Field mustard	cytosol	50.98	24.16
GSMUA_Achr3P04920_001	Banana	cytosol	51.95	23.88
VIT_08s0007g07180.t01	Wine grape	cytosol	54.88	23.78
KXG35906	Sorghum	cytosol	52.93	23.26
Zm00001d002169_P006	Maize	cytosol	52.44	23.12
Zm00001d002166_P004	Maize	cytosol	52.44	23.12
Os07t0124500-01	Rice	nucleus	51.95	22.76
HORVU5Hr1G063770.2	Barley	nucleus	50.98	22.55
TraesCS5A01G406000.1	Wheat	cytosol	50.49	22.43
TraesCS5A01G220000.1	Wheat	nucleus	50.73	22.41
TraesCS5D01G228100.1	Wheat	golgi, unclear	50.73	22.41
TraesCS5B01G219100.1	Wheat	nucleus	50.73	22.41
TraesCS5D01G416000.1	Wheat	cytosol	50.24	22.22
TraesCS5B01G410800.1	Wheat	cytosol	49.27	21.77
Bra007396.1-P	Field mustard	cytosol, mitochondrion	43.66	21.67
HORVU5Hr1G098600.1	Barley	cytosol	48.54	21.47
CDX71953	Canola	cytosol	42.2	21.1
AT3G22860.1	Thale cress	cytosol	41.22	20.99
Zm00001d002737_P002	Maize	vacuole	49.27	20.85
Zm00001d020935_P002	Maize	cytosol	36.59	18.23
EES13928	Sorghum	cytosol	39.76	18.21
VIT_16s0039g01140.t01	Wine grape	cytosol	1.46	7.23
HORVU2Hr1G058390.1	Barley	cytosol	2.44	6.13
HORVU2Hr1G058370.1	Barley	cytosol	2.68	6.04
Solyc01g102570.2.1	Tomato	cytosol, nucleus	4.63	5.34
Solyc01g102600.2.1	Tomato	cytosol	4.63	5.32
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	0.73	4.76

Protein Annotations

Gene3D:1.25.40.570	MapMan:17.4.1.3.3	InterPro:EIF3C_N_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0031369	InterPro:IPR000717
UniProt:K4B1I7	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937
PANTHER:PTHR13937:SF0	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc01g102590.2	EnsemblPlants:Solyc01g102590.2.1
UniParc:UPI0002767C69	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:91362579..91364815

Molecular Weight (calculated)

45971.9 Da

IEP (calculated)

10.070

GRAVY (calculated)

-0.450

Length

410 amino acids

Sequence
(BLAST)

001: MSGNRTSNLT RPIYLSAQKK CLVAIVDLDI RLTSEERPIG PNASPEANTI KCSNFFRNPV VQLLIFCFDY STFKSLRFLG ISPLQFHFSS FALVLKERME
101: RRRQMPYHMH INLELLEAVH LTCAMLLEVP NMAANSHDMK RRVISKTFRR LLEISERQTF TGPPENVRDH VMAATRSLRQ GDFQKAFDVI NSLDVWRLLR
201: NKDSVLEMLR GKIKEEALRT YLFTYSASYN SLSLDQVAGM FDLSVSQIHS IVSKMMISEE LHASWDQPSQ CMVFHDVEHT RLQALAFQLT EKLSVLAESN
301: ERATESRIGG GALEGLPPRR RDGQDYAAAA GGGGRWQDFS FSQGRQGSSG GRTGYAGSRS TSGQTSRDRT NQARGTLGGQ GSRYQSGTTS KGSQMDGSGR
401: MVNLNRGGRY

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.