Factsheet for Solyc01g088370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g102560.2.1
Solyc01g102570.2.1
Solyc01g102590.2.1
Solyc01g102600.2.1
Solyc06g076150.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	Solyc01g102560.2.1	AT3G56150.1	11029466
AT5G25780.1	Solyc01g102570.2.1	AT3G56150.1	11029466
AT5G25780.1	Solyc01g102590.2.1	AT3G56150.1	11029466
AT5G25780.1	Solyc01g102600.2.1	AT3G56150.1	11029466
AT5G25780.1	Solyc06g076150.2.1	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004200	Potato	cytosol	97.07	97.07
VIT_04s0008g07070.t01	Wine grape	cytosol	84.94	84.82
KRH64883	Soybean	endoplasmic reticulum	81.17	81.06
KRH48727	Soybean	endoplasmic reticulum	80.89	80.78
GSMUA_Achr11P...	Banana	cytosol	76.29	78.82
KRH61614	Soybean	endoplasmic reticulum	63.88	76.97
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	75.87	75.66
Bra007832.1-P	Field mustard	cytosol	75.31	75.63
CDY34755	Canola	cytosol	75.31	75.63
CDX76792	Canola	cytosol	75.03	75.35
EER91898	Sorghum	cytosol	75.59	75.28
Bra032059.1-P	Field mustard	cytosol	74.76	75.07
CDY45599	Canola	cytosol	74.76	75.07
HORVU5Hr1G106440.1	Barley	cytosol	75.31	74.9
AT5G25780.1	Thale cress	cytosol	74.48	74.79
TraesCS5A01G442500.1	Wheat	cytosol, golgi	74.48	74.69
CDY36167	Canola	cytosol	74.34	74.65
Zm00001d030011_P001	Maize	plasma membrane	74.9	74.58
HORVU4Hr1G014100.3	Barley	cytosol	74.9	74.48
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	74.76	74.34
TraesCS5B01G446600.1	Wheat	cytosol	74.62	74.2
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	74.2	73.79
AT5G27640.2	Thale cress	cytosol	75.73	73.58
TraesCS4A01G232600.1	Wheat	cytosol	73.64	73.23
TraesCS4B01G083200.1	Wheat	cytosol	71.83	73.05
TraesCS6B01G307400.1	Wheat	cytosol	69.46	72.38
TraesCS6D01G406100.1	Wheat	cytosol	34.59	54.03
AT1G49015.1	Thale cress	cytosol	15.9	50.22
CDY66663	Canola	mitochondrion	9.48	38.42
CDX80412	Canola	cytosol	26.5	37.62
CDX94125	Canola	endoplasmic reticulum, golgi	18.13	37.57
Bra009732.1-P	Field mustard	cytosol	26.22	37.08
CDX88073	Canola	cytosol	26.22	37.08
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	44.21	35.7
Solyc08g014060.2.1	Tomato	plastid	13.95	17.21
KRH66844	Soybean	cytosol	1.67	15.38

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	ncoils:Coil	InterPro:EIF3B	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0031369	GO:GO:0033290	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR015943	UniProt:K4AYM7
HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF08662	PIRSF:PIRSF036424	PFscan:PS50102
PANTHER:PTHR14068	InterPro:RBD_domain_sf	InterPro:RRM_dom	SUPFAM:SSF54928	SUPFAM:SSF82171	EnsemblPlantsGene:Solyc01g088370.2
EnsemblPlants:Solyc01g088370.2.1	InterPro:TIF_beta_prop-like	UniParc:UPI000276176B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:eIF3B_RRM	SEG:seg

Description

Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:K4AYM7]

Coordinates

chr1:+:83136798..83142274

Molecular Weight (calculated)

82723.0 Da

IEP (calculated)

4.977

GRAVY (calculated)

-0.583

Length

717 amino acids

Sequence
(BLAST)

001: MSEVVSMDEI RAISERLGVD LAKINLDSIH LPPGDDMGIP SDDEDLLKED ALEEDQGFGN ILVVDNLPVV PKEKYEKLEG VVRKIYSQLG VIKEGGLNMP
101: VDPVTQKTLG YCFIEYNTPQ EAELSKEKTH GYKLDRSHIF AVNMFEDIEK FLKVPDEWAP PEIKPYVPVE MLQKWLTDDK ARDQYVIRSG GDTEVLWNDA
201: RQMKPELVYK RPYWTESFVQ WSPMGTYLAT VHRQGAAIWG GATTFNRLMR YAHPQVKLID FSPGERYLVT YSSHEPSNPR DTHRVVLNIF DVRTGKVMRD
301: FKGSADEFAV GGTGGVTGVS WPVFRWSGGK EDKYFARIGK NVISVYETET FSLIDKKSIK VENVMDFSWS PTDPILSLFV PECGNQPARV SLVQIPSKEE
401: LRQKNLFSVS DCKMYWQSNG DYLAVKVDRY TKTKKSTYTG FELFRIKERD IPIEVLELDN KNDKIIAFAW EPKGHRFAVI HGDNPRPDVS FYSMRSGTNT
501: GRVSKLTTLK GKQANALYWS PGGRFIILAG MKGFNGQLEF FDVDELDTMA SAEHFMATDV EWDPTGRYVA TAVTSVHEME NGFNIWSFNG KLLYRILKDH
601: FFQFLWRPRP PSFLSKEKEE EIAKNLKKYS KKYEAEDQDV SLLLSEQDRE KRKKLKEEWE AWISKWKRLH EEEKMEREKL RDGEASDEEE EYEAKEVEVE
701: EILNVEEVVI PFEDSQQ

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.