Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G27640.2 | Thale cress | cytosol | 94.96 | 91.87 |
| Bra032059.1-P | Field mustard | cytosol | 90.06 | 90.06 |
| CDY45599 | Canola | cytosol | 90.06 | 90.06 |
| CDY36167 | Canola | cytosol | 89.78 | 89.78 |
| CDY34755 | Canola | cytosol | 89.36 | 89.36 |
| Bra007832.1-P | Field mustard | cytosol | 89.08 | 89.08 |
| CDX76792 | Canola | cytosol | 88.8 | 88.8 |
| VIT_04s0008g07060.t01 | Wine grape | mitochondrion | 10.64 | 76.0 |
| KRH64883 | Soybean | endoplasmic reticulum | 75.35 | 74.93 |
| KRH48727 | Soybean | endoplasmic reticulum | 75.07 | 74.65 |
| Solyc01g088370.2.1 | Tomato | nucleus, plastid | 74.79 | 74.48 |
| PGSC0003DMT400004200 | Potato | cytosol | 74.37 | 74.06 |
| GSMUA_Achr11P... | Banana | cytosol | 70.17 | 72.19 |
| KRH61614 | Soybean | endoplasmic reticulum | 59.24 | 71.09 |
| Os10t0569200-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 70.73 | 70.24 |
| TraesCS5A01G442500.1 | Wheat | cytosol, golgi | 70.03 | 69.93 |
| HORVU5Hr1G106440.1 | Barley | cytosol | 70.17 | 69.49 |
| EER91898 | Sorghum | cytosol | 70.03 | 69.44 |
| TraesCS5D01G449900.2 | Wheat | cytosol, nucleus, unclear | 70.03 | 69.35 |
| TraesCS5B01G446600.1 | Wheat | cytosol | 69.89 | 69.21 |
| HORVU4Hr1G014100.3 | Barley | cytosol | 69.75 | 69.07 |
| Zm00001d030011_P001 | Maize | plasma membrane | 69.47 | 68.89 |
| TraesCS4D01G081300.1 | Wheat | cytosol, nucleus | 69.19 | 68.52 |
| TraesCS4B01G083200.1 | Wheat | cytosol | 67.65 | 68.51 |
| TraesCS4A01G232600.1 | Wheat | cytosol | 69.05 | 68.38 |
| TraesCS6B01G307400.1 | Wheat | cytosol | 64.99 | 67.44 |
| AT1G49015.1 | Thale cress | cytosol | 17.65 | 55.51 |
| TraesCS6D01G406100.1 | Wheat | cytosol | 32.07 | 49.89 |
| HORVU5Hr1G008250.6 | Barley | cytosol, mitochondrion, plastid | 42.3 | 34.01 |
| AT1G73180.1 | Thale cress | cytosol | 12.46 | 17.35 |
| KRH66844 | Soybean | cytosol | 1.4 | 12.82 |
Protein Annotations
| MapMan:17.4.1.3.2 | Gene3D:2.130.10.10 | Gene3D:3.30.70.330 | EntrezGene:832647 | UniProt:A0A178UL74 | ProteinID:AED93487.1 |
| ArrayExpress:AT5G25780 | EnsemblPlantsGene:AT5G25780 | RefSeq:AT5G25780 | TAIR:AT5G25780 | RefSeq:AT5G25780-TAIR-G | EnsemblPlants:AT5G25780.1 |
| TAIR:AT5G25780.1 | Unigene:At.16948 | EMBL:BT002393 | ncoils:Coil | InterPro:EIF3B | Symbol:EIF3B-2 |
| GO:GO:0001731 | GO:GO:0001732 | GO:GO:0002183 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 |
| GO:GO:0006446 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016282 | GO:GO:0019538 | GO:GO:0031369 | GO:GO:0033290 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:IPR015943 | HAMAP:MF_03001 | RefSeq:NP_568477.1 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAO93854.1 |
| PFAM:PF00076 | PFAM:PF08662 | PIRSF:PIRSF036424 | PO:PO:0000005 | PO:PO:0000293 | PO:PO:0009010 |
| PFscan:PS50102 | PANTHER:PTHR14068 | UniProt:Q8GUM1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SUPFAM:SSF54928 |
| SUPFAM:SSF82171 | InterPro:TIF_beta_prop-like | UniParc:UPI00000AE1F1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:eIF3B_RRM | SEG:seg |
Description
EIF3B-2Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:Q8GUM1]
Coordinates
chr5:-:8973247..8976913
Molecular Weight (calculated)
82180.9 Da
IEP (calculated)
4.870
GRAVY (calculated)
-0.562
Length
714 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVVDIDVL TAQLGINWSD VNLDSIQLPP GNDFGIESDD ESVYQDDQSE FDTGFGNIIV VDHLPVVPKE KFEKLEGVVK KIYNQLGVIK ENGLLMPVDP
101: DTKMTLGYCF IEFNTPQEAQ NAKEKSHGYK LDKSHIFAVN MFDDFDRLMN VKEEWEPPQE RPYVPGENLQ KWLTDDKARD QLVIRFGHDT EVYWNDARQK
201: KPEPVHKRSY WTESYVQWSP IGTYLVTLHK QGAAVWGGAD TFTRLMRYQH SMVKLVDFSP GEKYLVTYHS QEPSNPRDAS KVEIKVFDVR TGRMMRDFKG
301: SADEFSIGGP GGVAGASWPV FRWAGGKDDK YFAKLSKNTI SVYETETFSL IDKKSMKVDN VVDICWSPTD SILSLFVPEQ GGGNQPAKVA LVQIPSKVEL
401: RQKNLFSVSD CKMYWQSSGE YLAVKVDRYT KTKKSTYSGF ELFRIKERDI PIEVLELDNK NDKIIAFAWE PKGHRFAVIH GDQPRPDVSF YSMKTAQNTG
501: RVSKLATLKA KQANALFWSP TGKYIILAGL KGFNGQLEFF NVDELETMAT AEHFMATDIE WDPTGRYVAT SVTTVHEMEN GFTIWSFNGN MVYRILKDHF
601: FQLAWRPRPA SFLTAEKEEE IAKNLRNYSK RYEAEDQDVS LLLSEQDREK RRALNEEWQK WVMQWKSLHE EEKLVRQNLR DGEVSDVEED EYEAKEVEFE
701: DLIDVTEEIV QELM
101: DTKMTLGYCF IEFNTPQEAQ NAKEKSHGYK LDKSHIFAVN MFDDFDRLMN VKEEWEPPQE RPYVPGENLQ KWLTDDKARD QLVIRFGHDT EVYWNDARQK
201: KPEPVHKRSY WTESYVQWSP IGTYLVTLHK QGAAVWGGAD TFTRLMRYQH SMVKLVDFSP GEKYLVTYHS QEPSNPRDAS KVEIKVFDVR TGRMMRDFKG
301: SADEFSIGGP GGVAGASWPV FRWAGGKDDK YFAKLSKNTI SVYETETFSL IDKKSMKVDN VVDICWSPTD SILSLFVPEQ GGGNQPAKVA LVQIPSKVEL
401: RQKNLFSVSD CKMYWQSSGE YLAVKVDRYT KTKKSTYSGF ELFRIKERDI PIEVLELDNK NDKIIAFAWE PKGHRFAVIH GDQPRPDVSF YSMKTAQNTG
501: RVSKLATLKA KQANALFWSP TGKYIILAGL KGFNGQLEFF NVDELETMAT AEHFMATDIE WDPTGRYVAT SVTTVHEMEN GFTIWSFNGN MVYRILKDHF
601: FQLAWRPRPA SFLTAEKEEE IAKNLRNYSK RYEAEDQDVS LLLSEQDREK RRALNEEWQK WVMQWKSLHE EEKLVRQNLR DGEVSDVEED EYEAKEVEFE
701: DLIDVTEEIV QELM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.