Factsheet for HORVU5Hr1G008250.6

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G058370.1
HORVU2Hr1G058390.1
HORVU5Hr1G063770.2
HORVU5Hr1G098600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	HORVU2Hr1G058370.1	AT3G56150.1	11029466
AT5G25780.1	HORVU2Hr1G058390.1	AT3G56150.1	11029466
AT5G25780.1	HORVU5Hr1G063770.2	AT3G56150.1	11029466
AT5G25780.1	HORVU5Hr1G098600.1	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g07060.t01	Wine grape	mitochondrion	6.53	58.0
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	39.75	49.1
HORVU5Hr1G106440.1	Barley	cytosol	39.75	48.96
AT1G49015.1	Thale cress	cytosol	12.5	48.9
EER91898	Sorghum	cytosol	39.08	48.19
Zm00001d030011_P001	Maize	plasma membrane	38.85	47.92
HORVU4Hr1G014100.3	Barley	cytosol	38.85	47.85
GSMUA_Achr11P...	Banana	cytosol	37.39	47.84
VIT_04s0008g07070.t01	Wine grape	cytosol	36.94	45.68
KRH64883	Soybean	endoplasmic reticulum	36.49	45.13
KRH48727	Soybean	endoplasmic reticulum	36.04	44.57
PGSC0003DMT400004200	Potato	cytosol	35.81	44.35
Solyc01g088370.2.1	Tomato	nucleus, plastid	35.7	44.21
CDY36167	Canola	cytosol	34.57	43.0
CDY45599	Canola	cytosol	34.46	42.86
Bra032059.1-P	Field mustard	cytosol	34.46	42.86
CDY34755	Canola	cytosol	34.23	42.58
Bra007832.1-P	Field mustard	cytosol	34.23	42.58
CDX76792	Canola	cytosol	34.12	42.44
AT5G25780.1	Thale cress	cytosol	34.01	42.3
KRH61614	Soybean	endoplasmic reticulum	28.15	42.02
TraesCS6D01G406100.1	Wheat	cytosol	21.62	41.83
AT5G27640.2	Thale cress	cytosol	34.23	41.19
CDX94125	Canola	endoplasmic reticulum, golgi	14.98	38.44
CDX80412	Canola	cytosol	19.93	35.05
Bra009732.1-P	Field mustard	cytosol	19.93	34.91
CDX88073	Canola	cytosol	19.93	34.91
CDY66663	Canola	mitochondrion	3.94	19.77
KRH66844	Soybean	cytosol	1.35	15.38
HORVU6Hr1G055460.11	Barley	nucleus, plastid	8.56	14.59

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	UniProt:A0A287QA78	InterPro:EIF3B	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	EnsemblPlantsGene:HORVU5Hr1G008250
EnsemblPlants:HORVU5Hr1G008250.6	InterPro:IPR015943	HAMAP:MF_03001	PFAM:PF08662	PANTHER:PTHR14068	InterPro:Papain_like_cys_pep_sf
SUPFAM:SSF54001	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	UniParc:UPI000B47CCC6	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg

Description

Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:A0A287QA78]

Coordinates

chrchr5H:-:19032840..19049878

Molecular Weight (calculated)

101379.0 Da

IEP (calculated)

9.843

GRAVY (calculated)

-0.454

Length

888 amino acids

Sequence
(BLAST)

001: APPRPRANLY PPRRVFLSRR PSLPGEVHNM PPNIKYGLGS SRLAKPWLCV CGRANWPTRH LIFMLPKDRC DCGRKFTGDF RISFDDIKVN GHYLLGKVHR
101: QGKKPRCVAY AYVHGLQFKE RLEAVIMKHD PSLLMDLEPK KLNAMFTVRC PGMPEKSRFI KGVRDIRMVH MALILKEDGL IGPEPNVVHR VDDIIVIPRD
201: DFRSISIAIA DGATLVTTFY SGKKLRGLKY GQIYKSYRAP KYRGNKRKRT IGHAVCLIGA ARKNKEEYFD FVNSYKFFCR RRNSRGIIVK SGFGRLRASD
301: LKTNVIRLCR GITPGENEWR LQPQNETVLN AHNKNLMRTL KRQIANQLDI DDQLDIDGGM EFEDFDNHLN VSHGWKPAEI KPHMPGKRLS VEKVRCQFLV
401: NAGPCGEVYT NDAEKTTSDP VYQMQYRTCD LIQWSPLGTH LVTVDRQGAL MWGGDDKFAC LMSFGDQQVK LVDFSPGERY LVTYSSYEPS PMYHTNMVVL
501: HIFDVRSGKM MLDFKGTADE FTRSSSVGVY GISWPIFRWG GGRDDKYFAK LGKNVISVYE TETFSLLDKE PLKIDNVADF SWSPTEPILS CFVPELGGGK
601: QPARVSLVRI PGKLVMRQKI LSNASNCKMH WQHNGEYLAV QVERYAITKD QTSTGFELFR IRERGIPIEF FELDNKNDKI IAFAWEPKGH RFAVIHGDGD
701: ISFYTVRTTN NLSCVCKLTT LNGRQANALF WSPAGRFIVL AGLKDRNGQM EFYNLDDLET MAVAEHKATD VMWDPTGRFL ATVVTSVHEM GNGNSASEMG
801: TGFQVWSFDG KQICKVSKDQ LYQFGWRPRP SSSLLSPRKD ISIERTEAED VRTEGEQSSE PARGDGIGCC RRRRKKHIKL SRWLKWLW

Best Arabidopsis Sequence Match ( AT1G49015.1 )
(BLAST)

001: MAGVDGHVVD NSWPIIRWAG GKDDKYFATL IKNTTATQEG AAVNFDDVVG MSWSPTEPIL SLLKGDVKNQ PKKVVFLQIP GYVELMHKDI LSVSDCKMYW
101: QSKGKYLAVQ VTRHTCSLFE LFRFNKVQGI TTEALEVDEK ILAFAWEPSG HRFAVIHGDQ SKPNVSFYSM ETPQNPGKVS KLATFDDKEA DALFWSPRGK
201: HIVLAGLKAA SMAISSFSTW ISLRCSR

Arabidopsis Description

DPP6 N-terminal domain-like protein [Source:UniProtKB/TrEMBL;Acc:F4I057]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.