Factsheet for Os10t0569200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0123300-00
Os07t0124500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	Os02t0123300-00	AT3G56150.1	11029466
AT5G25780.1	Os07t0124500-01	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030011_P001	Maize	plasma membrane	88.46	88.33
EER91898	Sorghum	cytosol	88.18	88.06
TraesCS5A01G442500.1	Wheat	cytosol, golgi	85.81	86.29
HORVU5Hr1G106440.1	Barley	cytosol	86.51	86.27
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	86.51	86.27
TraesCS5B01G446600.1	Wheat	cytosol	86.37	86.13
HORVU4Hr1G014100.3	Barley	cytosol	84.84	84.6
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	84.28	84.05
TraesCS4A01G232600.1	Wheat	cytosol	84.01	83.77
TraesCS4B01G083200.1	Wheat	cytosol	81.5	83.12
TraesCS6B01G307400.1	Wheat	cytosol	79.42	82.99
GSMUA_Achr11P...	Banana	cytosol	78.3	81.12
VIT_04s0008g07070.t01	Wine grape	cytosol	78.86	78.97
KRH48727	Soybean	endoplasmic reticulum	76.5	76.6
PGSC0003DMT400004200	Potato	cytosol	76.22	76.43
KRH64883	Soybean	endoplasmic reticulum	76.22	76.32
Solyc01g088370.2.1	Tomato	nucleus, plastid	75.66	75.87
KRH61614	Soybean	endoplasmic reticulum	60.5	73.11
VIT_04s0008g07060.t01	Wine grape	mitochondrion	10.15	73.0
Bra007832.1-P	Field mustard	cytosol	71.35	71.85
CDY34755	Canola	cytosol	71.35	71.85
CDX76792	Canola	cytosol	71.07	71.57
CDY45599	Canola	cytosol	70.93	71.43
CDY36167	Canola	cytosol	70.93	71.43
Bra032059.1-P	Field mustard	cytosol	70.93	71.43
AT5G25780.1	Thale cress	cytosol	70.24	70.73
AT5G27640.2	Thale cress	cytosol	71.77	69.92
TraesCS6D01G406100.1	Wheat	cytosol	40.75	63.83
AT1G49015.1	Thale cress	cytosol	16.55	52.42
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	49.1	39.75
Bra009732.1-P	Field mustard	cytosol	26.7	37.87
CDX88073	Canola	cytosol	26.7	37.87
CDY66663	Canola	mitochondrion	9.32	37.85
CDX94125	Canola	endoplasmic reticulum, golgi	17.94	37.28
CDX80412	Canola	cytosol	26.15	37.23
KRH66844	Soybean	cytosol	1.53	14.1
Os02t0606100-00	Rice	nucleus, plasma membrane	1.25	7.83

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	EntrezGene:4349446	ProteinID:AAL86464.1	ProteinID:AAP55090.1
EMBL:AK067998	ProteinID:BAF27283.1	ProteinID:BAT12145.1	ncoils:Coil	InterPro:EIF3B	GO:GO:0001732
GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR015943	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os10g0569200
EnsemblPlants:Os10t0569200-01	PFAM:PF00076	PFAM:PF08662	PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068
UniProt:Q8S7Q0	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF82171
InterPro:TIF_beta_prop-like	UniParc:UPI00000A529D	InterPro:WD40/YVTN_repeat-like_dom_sf	RefSeq:XP_015614131.1	InterPro:eIF3B_RRM	SEG:seg

Description

EUKARYOTIC INITIATION FACTOR 3BSix-bladed beta-propeller, TolB-like domain containing protein. (Os10t0569200-01)

Coordinates

chr10:-:22563367..22567751

Molecular Weight (calculated)

83186.1 Da

IEP (calculated)

4.708

GRAVY (calculated)

-0.606

Length

719 amino acids

Sequence
(BLAST)

001: MALEISMEGI EARARELGVD LSTVDLDSVT LPAGEDFGIL SDDEDLLRID DPMELEMGFA NVVVVDNLPV VPPEKFEKLE NVIRKIYSQI GAIKEGGLWM
101: PVNPETKKTY GYCFIEYNTP QEAELAREKT NGYKLDKSHI FAVNMFDDFD KYMKVPDEWM PAEIKPYTPG ENLQKWLADE KARDQFVIRA GTFTEVYWND
201: ARQKMPELVF QKQYWTDSFI QWSPLGTYLA TVHRQGSQVW GGDDKFERLM RFAHAQVKLI DFSPGEKYLV TYSSHEPSNP RDTHRVVLNI FDVRTGKVMR
301: DFKGSADEFS ASGNISVSGV SWPIFRWGGG KDDKYFARLG KNVISVYETE TFSLLDKKSL KVENVVDFCW SPTDPIIALF VPELGGGNQP ARVSLVQIPG
401: KEELRQKNLF SVSDCKMYWQ NSGEYLAVQV DRYTKTKKST YTGFELFRIK ERDIPIEVLE LDNKNDKIIA FAWEPKGHRF AVIHGDGPKP DISFYSMKTS
501: NNISRVSKLT TLKGKQANAL FWSPGGRFIV FAGLKGFNGQ LEFYNVDELE TMATGEHFMA TDIMWDPTGR YLASAVTSVH EMENGFQIWS FSGKQLYKVS
601: KDHFFQFLWR PRPPSLLTPE KEDEIAKNLR KYSKKYEQED QDAFNQLSEQ ERKRRKQLQE EWEGWVAKWK QLHEEERPYR MELRDGEASD DEEEYDTKEV
701: EIEEEVDVQE EVPFELDQE

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.