Factsheet for TraesCS6D01G406100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G220000.1
TraesCS5A01G406000.1
TraesCS5B01G219100.1
TraesCS5B01G410800.1
TraesCS5D01G228100.1
TraesCS5D01G416000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	TraesCS5A01G220000.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5A01G406000.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5B01G219100.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5B01G410800.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5D01G228100.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5D01G416000.1	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g07060.t01	Wine grape	mitochondrion	10.46	48.0
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	63.83	40.75
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	63.83	40.64
EER91898	Sorghum	cytosol	62.75	40.0
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	62.53	39.81
Zm00001d030011_P001	Maize	plasma membrane	62.31	39.72
GSMUA_Achr11P...	Banana	cytosol	59.26	39.19
VIT_04s0008g07070.t01	Wine grape	cytosol	57.3	36.63
KRH64883	Soybean	endoplasmic reticulum	56.21	35.93
KRH48727	Soybean	endoplasmic reticulum	55.77	35.65
PGSC0003DMT400004200	Potato	cytosol	54.68	35.01
KRH61614	Soybean	endoplasmic reticulum	45.1	34.79
Solyc01g088370.2.1	Tomato	nucleus, plastid	54.03	34.59
CDY36167	Canola	cytosol	50.76	32.63
CDY45599	Canola	cytosol	50.76	32.63
Bra032059.1-P	Field mustard	cytosol	50.76	32.63
Bra007832.1-P	Field mustard	cytosol	50.54	32.49
CDY34755	Canola	cytosol	50.54	32.49
CDX76792	Canola	cytosol	50.54	32.49
AT5G25780.1	Thale cress	cytosol	49.89	32.07
AT5G27640.2	Thale cress	cytosol	51.2	31.84
AT1G49015.1	Thale cress	cytosol	13.94	28.19
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	41.83	21.62
CDX94125	Canola	endoplasmic reticulum, golgi	15.69	20.81
Bra009732.1-P	Field mustard	cytosol	20.48	18.54
CDX88073	Canola	cytosol	20.48	18.54
CDX80412	Canola	cytosol	20.26	18.42
CDY66663	Canola	mitochondrion	6.75	17.51
TraesCS6D01G199300.3	Wheat	plastid	9.59	7.24
KRH66844	Soybean	cytosol	0.44	2.56

Protein Annotations

Gene3D:2.130.10.10	Gene3D:3.30.70.330	MapMan:35.1	InterPro:EIF3B	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0031369
InterPro:IPR012677	InterPro:IPR015943	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF08662	PANTHER:PTHR14068	SUPFAM:SSF82171
InterPro:TIF_beta_prop-like	EnsemblPlantsGene:TraesCS6D01G406100	EnsemblPlants:TraesCS6D01G406100.1	InterPro:WD40/YVTN_repeat-like_dom_sf	TIGR:cd12278	InterPro:eIF3B_RRM
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:472803768..472806050

Molecular Weight (calculated)

52357.7 Da

IEP (calculated)

4.687

GRAVY (calculated)

-0.433

Length

459 amino acids

Sequence
(BLAST)

001: MAAVTRPQLE ARARELGVDL TAVDLDSITL PADAGDFPCS NDDDDDDDDE VLLLESDVGP PPELETGFGN VIIVDNLPIV PAEKFERLQC VMRAIYGQIG
101: VIKEGGLWIP ILYTTYGYCF IEYATPKEAE LARRKTNLYA LDRFHKFQVN MFDDFDKYIK VPDQWTLPDE IKQYTPAPNL HKWLMDGKAR DQFVIRVGTS
201: TEVYWNDVVP ELAYQKQRWT DSFVEWSPLG TYLATVHRQG AQVVSGCKMY WQNNGEYLAV QVDRHAEAER RTCCTSLELF RIKERGIPRE VFELDKKNDN
301: IVAFAWEPRG SRFAVIHSDG FKHDISFYSM HSADDVSRVS KLTTLKDRQA DALFWSPAGN CTYNVDDLET MATREHPMAT DVMWDPTGRF IATASLGHEM
401: GNDIRVWSFT GKQIYKASKE QFSQFQWRPR PPSLLTPAKE MEISTQPTEK AELLVSASS

Best Arabidopsis Sequence Match ( AT5G25780.1 )
(BLAST)

001: MAAVVDIDVL TAQLGINWSD VNLDSIQLPP GNDFGIESDD ESVYQDDQSE FDTGFGNIIV VDHLPVVPKE KFEKLEGVVK KIYNQLGVIK ENGLLMPVDP
101: DTKMTLGYCF IEFNTPQEAQ NAKEKSHGYK LDKSHIFAVN MFDDFDRLMN VKEEWEPPQE RPYVPGENLQ KWLTDDKARD QLVIRFGHDT EVYWNDARQK
201: KPEPVHKRSY WTESYVQWSP IGTYLVTLHK QGAAVWGGAD TFTRLMRYQH SMVKLVDFSP GEKYLVTYHS QEPSNPRDAS KVEIKVFDVR TGRMMRDFKG
301: SADEFSIGGP GGVAGASWPV FRWAGGKDDK YFAKLSKNTI SVYETETFSL IDKKSMKVDN VVDICWSPTD SILSLFVPEQ GGGNQPAKVA LVQIPSKVEL
401: RQKNLFSVSD CKMYWQSSGE YLAVKVDRYT KTKKSTYSGF ELFRIKERDI PIEVLELDNK NDKIIAFAWE PKGHRFAVIH GDQPRPDVSF YSMKTAQNTG
501: RVSKLATLKA KQANALFWSP TGKYIILAGL KGFNGQLEFF NVDELETMAT AEHFMATDIE WDPTGRYVAT SVTTVHEMEN GFTIWSFNGN MVYRILKDHF
601: FQLAWRPRPA SFLTAEKEEE IAKNLRNYSK RYEAEDQDVS LLLSEQDREK RRALNEEWQK WVMQWKSLHE EEKLVRQNLR DGEVSDVEED EYEAKEVEFE
701: DLIDVTEEIV QELM

Arabidopsis Description

EIF3B-2Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:Q8GUM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.