Factsheet for TraesCS6D01G199300.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G246600.1	Wheat	plastid	79.77	93.09
HORVU6Hr1G055460.11	Barley	nucleus, plastid	78.12	91.17
TraesCS6A01G216300.2	Wheat	nucleus	77.3	91.09
EES05393	Sorghum	nucleus	65.95	76.67
Zm00001d017150_P001	Maize	nucleus	64.97	75.53
KRH71216	Soybean	nucleus	50.33	59.07
GSMUA_Achr6P28750_001	Banana	nucleus	50.49	58.93
KRH50214	Soybean	nucleus	49.18	57.83
AT1G73180.1	Thale cress	cytosol	48.68	57.7
CDX68240	Canola	nucleus	47.37	56.14
Bra003854.1-P	Field mustard	nucleus	47.2	55.95
Os02t0606100-00	Rice	nucleus, plasma membrane	10.36	54.78
VIT_05s0094g00460.t01	Wine grape	nucleus	49.67	52.34
Solyc08g014060.2.1	Tomato	plastid	48.52	50.77
CDY11124	Canola	mitochondrion	46.22	49.56
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	14.14	11.93
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	14.14	11.93
TraesCS6D01G406100.1	Wheat	cytosol	7.24	9.59

Protein Annotations

MapMan:17.4.3.1	Gene3D:2.130.10.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR015943
PFAM:PF08662	PIRSF:PIRSF017222	PANTHER:PTHR13227	SUPFAM:SSF82171	InterPro:TIF2A	InterPro:TIF_beta_prop-like
EnsemblPlantsGene:TraesCS6D01G199300	EnsemblPlants:TraesCS6D01G199300.3	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:+:277134743..277140866

Molecular Weight (calculated)

54612.7 Da

IEP (calculated)

9.904

GRAVY (calculated)

-0.346

Length

608 amino acids

Sequence
(BLAST)

001: VRAPDGFTVW PGPPYPPGSS PPQRLPKTAC SATSFSSDGS RLLATVASAS ATVYDCSSLS VIRSFDLPGL TAAALSPTGS YLQTFQKSSS PQVKNVTVWH
101: VDTATALYQH YQKNLSKANW PMVQFSADES VACRMATNEM QFFDTNDFTK GIVYKVRLPG IAALQLASAP GSHVAGFVPE AKGVPASVQI FSCDKDAQNQ
201: VVARRSFFRC STVQFHWNKG STGLLIVSQA DVDKTNQSYY GETKLHYLTT DRAFEGIVPL KKEGPVHDVQ WSSSGSEFAV VYGYMPAKAT IFNKKCNPLH
301: ELGEGPYNTI RWNPKGRFIV IAGFGNLPGD MAFWDYSEKK LIQKAKAEWS VISEWSPDGR HFMTATTAPR LQIDNRIKIF DHTGSLQFIK EFEKLYQVDW
401: KPESPERFGD IAELTISLNG IKIEETKKQG SRQGSKSAQT SSKAPVNVAA KPAGAYRPPQ SKHTAALQDK LFGGLAPTGG EMSKTALRNK KRREKQKXXX
501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
601: XXXXXXXX

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.