Factsheet for Bra003854.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68240	Canola	nucleus	99.22	99.22
CDY11124	Canola	mitochondrion	93.96	85.01
AT1G73180.1	Thale cress	cytosol	84.41	84.41
KRH71216	Soybean	nucleus	63.35	62.74
KRH50214	Soybean	nucleus	62.57	62.09
GSMUA_Achr6P28750_001	Banana	nucleus	61.79	60.84
VIT_05s0094g00460.t01	Wine grape	nucleus	64.33	57.19
EES05393	Sorghum	nucleus	57.89	56.79
TraesCS6A01G216300.2	Wheat	nucleus	57.12	56.78
Solyc08g014060.2.1	Tomato	plastid	63.94	56.45
TraesCS6B01G246600.1	Wheat	plastid	56.53	55.66
HORVU6Hr1G055460.11	Barley	nucleus, plastid	56.53	55.66
Zm00001d017150_P001	Maize	nucleus	56.53	55.45
TraesCS6D01G199300.3	Wheat	plastid	55.95	47.2
Os02t0606100-00	Rice	nucleus, plasma membrane	8.77	39.13
Bra009732.1-P	Field mustard	cytosol	15.2	15.38
Bra007832.1-P	Field mustard	cytosol	17.74	12.75
Bra032059.1-P	Field mustard	cytosol	16.96	12.18

Protein Annotations

MapMan:17.4.3.1	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra003854	EnsemblPlants:Bra003854.1	EnsemblPlants:Bra003854.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006412	GO:GO:0006413	GO:GO:0006417
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0019538	InterPro:IPR015943	UniProt:M4CI21	PFAM:PF08662	PIRSF:PIRSF017222	PANTHER:PTHR13227
SUPFAM:SSF82171	InterPro:TIF2A	InterPro:TIF_beta_prop-like	UniParc:UPI0002541798	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg

Description

AT1G73180 (E=9e-246) | eukaryotic translation initiation factor-related

Coordinates

chrA07:-:15374868..15379221

Molecular Weight (calculated)

56607.8 Da

IEP (calculated)

9.425

GRAVY (calculated)

-0.500

Length

513 amino acids

Sequence
(BLAST)

001: MSSSPSLEIL VRDAEGFIVW NGPPFSSNGQ PTPKNERVSC SSTKFSLDGS KFMAVKSDGT ISIYESASLR EVRSFTVANV TATEISPCGT YLQTFQKPTT
101: PQEKNVSLWN TDTGDLAHSL YQKSITKTTW PSIRFSPDES SACRLATNEV QFFDPKDFSK GITSRIRVPG VAAFELSKTP ASHVAVFVPE VKGSPGSVQI
201: FGCGKDAESQ PSARRSFFRC SSVQFSWNHG STGLLVVVQS DVDKTNKSYY GETKLHYLTV DGTHEGLVPL RKEGPVHDVQ WSFSGSEFAV VYGFMPACVT
301: IFDKKCKPLM ELGEGPYNTL RWNPKGRILC VAGFGNLPGD MTFWDVVSKK QLGSNKAEWS VTSEWSPDGR YFLTASTAPR RQIDNGIKIF NYDGKRYFKK
401: MFERLYQVEW KPESPDRFDE ISELLKSVES LKLEEGKSQG QGSSQKKPVA SIPTIQRPAA YRPPHAKQAA AIQAELLGVN PEGEMSKNAL RNKKKREKKK
501: AAEAAAASGS NNA

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.