Factsheet for GSMUA_Achr6P28750_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50214	Soybean	nucleus	66.41	66.92
KRH71216	Soybean	nucleus	65.45	65.83
AT1G73180.1	Thale cress	cytosol	61.61	62.57
EES05393	Sorghum	nucleus	62.76	62.52
CDX68240	Canola	nucleus	61.04	61.99
HORVU6Hr1G055460.11	Barley	nucleus, plastid	61.8	61.8
Bra003854.1-P	Field mustard	nucleus	60.84	61.79
Zm00001d017150_P001	Maize	nucleus	61.8	61.57
TraesCS6A01G216300.2	Wheat	nucleus	60.65	61.24
TraesCS6B01G246600.1	Wheat	plastid	61.23	61.23
VIT_05s0094g00460.t01	Wine grape	nucleus	66.99	60.49
Solyc08g014060.2.1	Tomato	plastid	66.41	59.55
CDY11124	Canola	mitochondrion	58.35	53.62
TraesCS6D01G199300.3	Wheat	plastid	58.93	50.49
Os02t0606100-00	Rice	nucleus, plasma membrane	10.94	49.57
GSMUA_Achr11P...	Banana	cytosol	17.08	12.82

Protein Annotations

MapMan:17.4.3.1	Gene3D:2.130.10.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006412	GO:GO:0006413	GO:GO:0006417	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G28750_001	EnsemblPlants:GSMUA_Achr6P28750_001
EnsemblPlants:GSMUA_Achr6T28750_001	InterPro:IPR015943	UniProt:M0TB20	PFAM:PF08662	PIRSF:PIRSF017222	PANTHER:PTHR13227
SUPFAM:SSF82171	InterPro:TIF2A	InterPro:TIF_beta_prop-like	UniParc:UPI000295BCD8	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg

Description

Putative Eukaryotic translation initiation factor 2A [Source:GMGC_GENE;Acc:GSMUA_Achr6G28750_001]

Coordinates

chr6:-:29051128..29063118

Molecular Weight (calculated)

57837.8 Da

IEP (calculated)

9.403

GRAVY (calculated)

-0.385

Length

521 amino acids

Sequence
(BLAST)

001: MSSLVQSPTL EILAREPEVF SIWKGPPFSN GQPLVKLEKV PCTVARFSEN GSRLMVTKSN TVISVQDCCS STEIRSFDIP SLLAATLSPC GTYLQTFHKA
101: TTPQDKNVVL WEVQTGAAVY QHFQKNMSKT TWPSIIFTSD ESVACRMATN EIQFFDSKDF SKGIIHRLRL PGIAAIELSK APGHYIAAFV PESKGIPASV
201: QIFSCSKDAQ TQPIARRSFF RCSTVALHWN KISSGVLVVA QSDVDKSNQS YYGESKLNYL TTDGSHEGLV PLRKEGPVHD VQWSYSGLEF AVVYGFMPAR
301: ATIFDRKCNP LLELGQGSYN TIRFNPKGRL ICLAGFGNLP GDMAFWDYTE KKLLGTTKAE WSVTSEWSPD GQYFMTVTTA PRLQIDNGIK IFRYDGSLYF
401: KKMFSKLYQA DWKPEAPERF DDINELVKSV ETLKIDNNEK KVQVPKSSSE TRSNIQASSV QKPAAYRPPH AKNAASVKAE LFGGTAPSEE MSKNALRNKK
501: RREKQKEKKA AEASAAASGS S

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.