Factsheet for HORVU6Hr1G055460.11

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G246600.1	Wheat	plastid	97.5	97.5
TraesCS6A01G216300.2	Wheat	nucleus	93.47	94.38
EES05393	Sorghum	nucleus	79.46	79.16
TraesCS6D01G199300.3	Wheat	plastid	91.17	78.12
Zm00001d017150_P001	Maize	nucleus	77.54	77.25
Os02t0606100-00	Rice	nucleus, plasma membrane	14.4	65.22
GSMUA_Achr6P28750_001	Banana	nucleus	61.8	61.8
KRH71216	Soybean	nucleus	60.46	60.81
KRH50214	Soybean	nucleus	59.69	60.15
AT1G73180.1	Thale cress	cytosol	57.39	58.28
CDX68240	Canola	nucleus	55.85	56.73
Bra003854.1-P	Field mustard	nucleus	55.66	56.53
VIT_05s0094g00460.t01	Wine grape	nucleus	59.88	54.07
Solyc08g014060.2.1	Tomato	plastid	58.54	52.5
CDY11124	Canola	mitochondrion	55.09	50.62
HORVU4Hr1G014100.3	Barley	cytosol	16.89	12.21
HORVU5Hr1G106440.1	Barley	cytosol	16.7	12.07
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	14.59	8.56

Protein Annotations

MapMan:17.4.3.1	Gene3D:2.130.10.10	UniProt:A0A287U8N4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006412	GO:GO:0006413	GO:GO:0006417	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	EnsemblPlantsGene:HORVU6Hr1G055460	EnsemblPlants:HORVU6Hr1G055460.11
InterPro:IPR015943	PFAM:PF08662	PIRSF:PIRSF017222	PANTHER:PTHR13227	SUPFAM:SSF82171	InterPro:TIF2A
InterPro:TIF_beta_prop-like	UniParc:UPI000B464993	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg	:	:

Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:A0A287U8N4]

Coordinates

chrchr6H:+:352566227..352571785

Molecular Weight (calculated)

57116.5 Da

IEP (calculated)

9.703

GRAVY (calculated)

-0.439

Length

521 amino acids

Sequence
(BLAST)

001: MASQQPSLAI LVREPDGFTV WPGPPYPPGS SPPQRLPKTA CSATSFSTDG SRLLVTVAQA SATVYDCSSL SVIRSFDLPG LTAAALSPTG SYLQTFQKSS
101: SPQVKNVTVW HVDSAAALYQ HYQKNLSKAN WPMVQFSADE SVACRMATNE MQFFDTNDFT KGIAYKVRLP GIAAMQLASA PGSHVAGFVP EAKGVPASVQ
201: IFSCDKDAQN QVVARRSFFR CSTVQFHWNK GSTGLLIVSQ ADVDKTNQSY YGETKLHYLT TDRAFEGIVP LKKEGPVHDV QWSSSGSEFA VVYGFMPAKA
301: TIFNKKCNPL HELGEGPYNT IRWNPKGRFI VIAGFGNLPG DMAFWDYTEK KLIQKAKAEW SVISEWSPDG RHFMTATTAP RLQIDNRIKI FDYTGSLQFK
401: KDFEKLYQVD WKPESPERFG DIADLTISLN SIKIEETKKQ VSGQGSKSAQ TSSKAPVNVA TKPAGAYRPP QSKHTAALQD KLFGGLAPTG GEMSKTALRN
501: KKRREKQKEK KAGEGSSADD S

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.