Factsheet for VIT_05s0094g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50214	Soybean	nucleus	66.2	73.89
KRH71216	Soybean	nucleus	63.43	70.66
GSMUA_Achr6P28750_001	Banana	nucleus	60.49	66.99
AT1G73180.1	Thale cress	cytosol	58.75	66.08
CDX68240	Canola	nucleus	57.54	64.72
Solyc08g014060.2.1	Tomato	plastid	65.16	64.72
Bra003854.1-P	Field mustard	nucleus	57.19	64.33
EES05393	Sorghum	nucleus	54.77	60.42
HORVU6Hr1G055460.11	Barley	nucleus, plastid	54.07	59.88
TraesCS6A01G216300.2	Wheat	nucleus	53.55	59.88
TraesCS6B01G246600.1	Wheat	plastid	53.73	59.5
Zm00001d017150_P001	Maize	nucleus	53.21	58.7
CDY11124	Canola	mitochondrion	55.98	56.97
TraesCS6D01G199300.3	Wheat	plastid	52.34	49.67
Os02t0606100-00	Rice	nucleus, plasma membrane	8.67	43.48
VIT_04s0008g07060.t01	Wine grape	mitochondrion	3.64	21.0
VIT_04s0008g07070.t01	Wine grape	cytosol	16.64	13.37

Protein Annotations

EntrezGene:100249064	wikigene:100249064	MapMan:17.4.3.1	Gene3D:2.130.10.10	ProteinID:CCB49376	ProteinID:CCB49376.1
ncoils:Coil	UniProt:F6HAX2	EMBL:FN595507	GO:GO:0000049	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0005886
GO:GO:0006412	GO:GO:0006413	GO:GO:0006417	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022627	GO:GO:0043022
InterPro:IPR015943	EntrezGene:LOC100249064	wikigene:LOC100249064	PFAM:PF08662	PIRSF:PIRSF017222	PANTHER:PTHR13227
SUPFAM:SSF82171	TIGR:TC53256	InterPro:TIF2A	InterPro:TIF_beta_prop-like	UniParc:UPI000210928C	ArrayExpress:VIT_05s0094g00460
EnsemblPlantsGene:VIT_05s0094g00460	EnsemblPlants:VIT_05s0094g00460.t01	unigene:Vvi.7631	InterPro:WD40/YVTN_repeat-like_dom_sf	RefSeq:XP_002276161	RefSeq:XP_002276161.1
RefSeq:XP_003632107	RefSeq:XP_003632107.1	SEG:seg	:	:	:

Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:F6HAX2]

Coordinates

chr5:-:23788562..23795108

Molecular Weight (calculated)

63089.7 Da

IEP (calculated)

8.552

GRAVY (calculated)

-0.390

Length

577 amino acids

Sequence
(BLAST)

001: MESCVCQVLE MAASQEKQLN LAKQFAQNSD GCEGRGSGSC GGSAFVWVAC PFIDSPVSFM DSVPSLEILV RAPEGFSLWC GPPFNNGQPA VKLEKVICTN
101: AKFSEDGSRL MVMKSDSTVS IYDCSSSKEI RSFAVPNMSA ATMSPCGTYL QTFQRPSTPQ EKNVILWKTE TGAPVYQHFQ KNMTKTTWPS VQFSSDEAIA
201: CRLATNEIQF FDARDFSKEI IYRVRIPGIA AVELSKAPGS HVAAFIPESK GIPASVQIFA CGENSMSQPV ARRSFFRCST VQLSWNRGST GLLVLVQADV
301: DKTNQSYFGE SKLNYLTTNG THEGLVPLSK EGPVHDVQWS YSGSEFAVVY GFMPAKATVF DKKCNPLVEL GTGPYNTIRW NPKGKFLCLA GFGNLPGDMA
401: FWDYKEKKQL GTTRAEWSVT SEWSPDGCYF MTATTAPRLQ VDNGIKIFHP NGSLYFKTMF DKLYQADWKP ESPDRFGEIA ELAQSIDSLK VGETKQQGQG
501: SKSSVAPNKA TSANPPTQKP AAYRPPHAKT AAAIQTKLFG GSSTEEMSKN AAKNKKKREK QREKKAAEAA TAANNGA

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.