Factsheet for TraesCS6A01G216300.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G246600.1	Wheat	plastid	96.32	95.39
HORVU6Hr1G055460.11	Barley	nucleus, plastid	94.38	93.47
EES05393	Sorghum	nucleus	80.23	79.16
Zm00001d017150_P001	Maize	nucleus	78.68	77.63
TraesCS6D01G199300.3	Wheat	plastid	91.09	77.3
Os02t0606100-00	Rice	nucleus, plasma membrane	14.34	64.35
GSMUA_Achr6P28750_001	Banana	nucleus	61.24	60.65
KRH71216	Soybean	nucleus	60.27	60.04
KRH50214	Soybean	nucleus	59.88	59.77
AT1G73180.1	Thale cress	cytosol	58.14	58.48
CDX68240	Canola	nucleus	56.98	57.31
Bra003854.1-P	Field mustard	nucleus	56.78	57.12
VIT_05s0094g00460.t01	Wine grape	nucleus	59.88	53.55
Solyc08g014060.2.1	Tomato	plastid	58.33	51.81
CDY11124	Canola	mitochondrion	56.4	51.32
TraesCS4A01G232600.1	Wheat	cytosol	16.86	12.07
TraesCS5A01G442500.1	Wheat	cytosol, golgi	16.47	11.89

Protein Annotations

MapMan:17.4.3.1	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR015943	PFAM:PF08662
PIRSF:PIRSF017222	PANTHER:PTHR13227	SUPFAM:SSF82171	InterPro:TIF2A	InterPro:TIF_beta_prop-like	EnsemblPlantsGene:TraesCS6A01G216300
EnsemblPlants:TraesCS6A01G216300.2	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6A:-:398179609..398186010

Molecular Weight (calculated)

56577.9 Da

IEP (calculated)

9.656

GRAVY (calculated)

-0.428

Length

516 amino acids

Sequence
(BLAST)

001: MASQQPSLAI LVREPDGFTV WPGPPYPPGS SPPQRLPKTA CSATSFSSDG SRLLATVASA SATVYDCSSL SVIRSFDLPG LTSAALSPTG SYLQTFQKSS
101: SPQVKNVTVW HVDTATALYQ HYQKNLSKAN WPMVQFSADE SVACRMATNE MQFFDTNDFT KGIVYKVRLP GIAALQLASA PGSHVAGFVP EAKGVPASVQ
201: IFSCDKDAQN QVVARRSFFR CSTVQFHWNK GSTGLLIVSQ ADVDKTNQSY YGETKLHYLT TDRAFEGIVP LKKEGPVHDV QWSSSGSEFA VVYGFMPAKA
301: TIFNKKCNPL HELGEGPYNT IRWNPKGRFI VIAGFGNLPG DMAFWDYSEK KLIQKAKAEW SVISEWSPDG RHFMTATTAP RLQIDNRIKI FDHTGSLQFI
401: KEFEKLYQVD WKPESPERFV DIAELTISLN GLKIEETKKQ VSGQGSKSAQ TSSKAAKPAG AYRPPQSKHT AALQDKLFGG LAPTGGEMSK TALRNKKRRE
501: KQKEKKAGEG SSADDS

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.