Factsheet for AT1G73180.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003854.1-P	Field mustard	nucleus	84.41	84.41
CDX68240	Canola	nucleus	84.41	84.41
CDY11124	Canola	mitochondrion	80.31	72.66
KRH71216	Soybean	nucleus	65.11	64.48
KRH50214	Soybean	nucleus	64.13	63.64
GSMUA_Achr6P28750_001	Banana	nucleus	62.57	61.61
VIT_05s0094g00460.t01	Wine grape	nucleus	66.08	58.75
EES05393	Sorghum	nucleus	59.65	58.51
TraesCS6A01G216300.2	Wheat	nucleus	58.48	58.14
Zm00001d017150_P001	Maize	nucleus	58.67	57.55
HORVU6Hr1G055460.11	Barley	nucleus, plastid	58.28	57.39
TraesCS6B01G246600.1	Wheat	plastid	58.28	57.39
Solyc08g014060.2.1	Tomato	plastid	64.91	57.31
Os02t0606100-00	Rice	nucleus, plasma membrane	11.11	49.57
TraesCS6D01G199300.3	Wheat	plastid	57.7	48.68
AT1G49015.1	Thale cress	cytosol	7.02	15.86
AT5G25780.1	Thale cress	cytosol	17.35	12.46
AT5G27640.2	Thale cress	cytosol	17.74	12.33

Protein Annotations

MapMan:17.4.3.1	Gene3D:2.130.10.10	EntrezGene:843652	ProteinID:AAG52134.1	ProteinID:AEE35425.1	ArrayExpress:AT1G73180
EnsemblPlantsGene:AT1G73180	RefSeq:AT1G73180	TAIR:AT1G73180	RefSeq:AT1G73180-TAIR-G	EnsemblPlants:AT1G73180.1	TAIR:AT1G73180.1
EMBL:AY056302	EMBL:AY091307	Unigene:At.19318	ncoils:Coil	GO:GO:0000049	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0005886	GO:GO:0006412	GO:GO:0006413	GO:GO:0006417	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022627
GO:GO:0043022	InterPro:IPR015943	RefSeq:NP_565058.1	PFAM:PF08662	PIRSF:PIRSF017222	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PANTHER:PTHR13227	UniProt:Q9CAT3
SUPFAM:SSF82171	InterPro:TIF2A	InterPro:TIF_beta_prop-like	UniParc:UPI00000AAB38	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg

Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]

Coordinates

chr1:+:27517891..27521710

Molecular Weight (calculated)

56300.5 Da

IEP (calculated)

9.218

GRAVY (calculated)

-0.453

Length

513 amino acids

Sequence
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.