Factsheet for Solyc08g014060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50214	Soybean	nucleus	63.17	70.99
KRH71216	Soybean	nucleus	61.45	68.92
GSMUA_Achr6P28750_001	Banana	nucleus	59.55	66.41
VIT_05s0094g00460.t01	Wine grape	nucleus	64.72	65.16
AT1G73180.1	Thale cress	cytosol	57.31	64.91
CDX68240	Canola	nucleus	56.63	64.13
Bra003854.1-P	Field mustard	nucleus	56.45	63.94
EES05393	Sorghum	nucleus	53.7	59.66
HORVU6Hr1G055460.11	Barley	nucleus, plastid	52.5	58.54
TraesCS6A01G216300.2	Wheat	nucleus	51.81	58.33
TraesCS6B01G246600.1	Wheat	plastid	52.15	58.16
Zm00001d017150_P001	Maize	nucleus	52.15	57.94
CDY11124	Canola	mitochondrion	55.25	56.61
TraesCS6D01G199300.3	Wheat	plastid	50.77	48.52
Os02t0606100-00	Rice	nucleus, plasma membrane	7.92	40.0
Solyc01g088370.2.1	Tomato	nucleus, plastid	17.21	13.95

Protein Annotations

MapMan:17.4.3.1	Gene3D:2.130.10.10	GO:GO:0000049	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0005886	GO:GO:0006412
GO:GO:0006413	GO:GO:0006417	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022627	GO:GO:0043022	InterPro:IPR015943
UniProt:K4CJ39	PFAM:PF08662	PIRSF:PIRSF017222	PANTHER:PTHR13227	SUPFAM:SSF82171	EnsemblPlantsGene:Solyc08g014060.2
EnsemblPlants:Solyc08g014060.2.1	InterPro:TIF2A	InterPro:TIF_beta_prop-like	UniParc:UPI000276B09C	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg

Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:K4CJ39]

Coordinates

chr8:-:3666041..3677540

Molecular Weight (calculated)

63515.9 Da

IEP (calculated)

9.579

GRAVY (calculated)

-0.283

Length

581 amino acids

Sequence
(BLAST)

001: MIISKPKSKS HYSLTLTHPD APPSALPPIR DRVYTKIGNT STEHKSVNPV ILKFIFLMAV VEPSSSLEIL VRGPEGFLIW NGPPFLSGEP GVKLDTVPCT
101: SAKFSDDGSK LMVTKSDSVI SIFDCKTLTE VRSFDVPNVL AAVISPCGTY LQTFQKCSSP QHKNVVLWKI ENGEFAYQLF QKNMTKVTWP SVHFSSDETV
201: ACRLATNEIQ SFDPRDFSKG FVNRLRVPGI AALELSKAPG SYVAAFVPES KGMPASVQIY ACGKDLQSQP VARRSFFRCS TVQLSWNSGS TGLLVVVQSD
301: VDKTNQSYYG ESKLNYLTTD GAHEGLVPLR KEGPIHDVQW SYSGKEFAVV YGFMPAMATV FDKKCNPLLE LGTGPYNTIR WNPLGNFICL AGFGNLPGDM
401: AFWDYREKKQ LGTTRAELSV TSEWSPDGRY FMTATTAPRL QVDNGVKVFH HNGSLYFKKM FDRLYQVDWK PESVEKFGDI EDLVKAVSSV KIDEAKVPGK
501: GSKATQAAPK ATQAVPKATP ANPPAAKPAA YRPPHAKAAA VVQAELFGAS PSGELSKNAL KNKKKREKKK QAEAASAAGG S

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.