CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003854.1-P	Field mustard	nucleus	99.22	99.22
CDY11124	Canola	mitochondrion	93.96	85.01
AT1G73180.1	Thale cress	cytosol	84.41	84.41
KRH71216	Soybean	nucleus	63.55	62.93
KRH50214	Soybean	nucleus	62.77	62.28
GSMUA_Achr6P28750_001	Banana	nucleus	61.99	61.04
VIT_05s0094g00460.t01	Wine grape	nucleus	64.72	57.54
EES05393	Sorghum	nucleus	58.09	56.98
TraesCS6A01G216300.2	Wheat	nucleus	57.31	56.98
Solyc08g014060.2.1	Tomato	plastid	64.13	56.63
TraesCS6B01G246600.1	Wheat	plastid	56.73	55.85
HORVU6Hr1G055460.11	Barley	nucleus, plastid	56.73	55.85
Zm00001d017150_P001	Maize	nucleus	56.73	55.64
TraesCS6D01G199300.3	Wheat	plastid	56.14	47.37
CDY66322	Canola	golgi, plastid	14.23	35.27
CDX94125	Canola	endoplasmic reticulum, golgi	13.45	19.94
CDX88073	Canola	cytosol	15.79	15.98
CDX80412	Canola	cytosol	14.62	14.85
CDY34755	Canola	cytosol	17.74	12.75
CDX76792	Canola	cytosol	17.54	12.61
CDY45599	Canola	cytosol	16.96	12.18
CDY36167	Canola	cytosol	16.96	12.18
CDY66663	Canola	mitochondrion	3.51	10.17

Protein Annotations

MapMan:17.4.3.1	Gene3D:2.130.10.10	GO:A0A078BU72	EnsemblPlants:CDX68240	ProteinID:CDX68240	ProteinID:CDX68240.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00099516001	InterPro:IPR015943	PFAM:PF08662
PIRSF:PIRSF017222	PANTHER:PTHR13227	SUPFAM:SSF50978	InterPro:TIF2A	InterPro:TIF_beta_prop-like	UniParc:UPI0004EE90A9
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaA07g22800D

Coordinates

chrLK031787:-:4573406..4577098

Molecular Weight (calculated)

56490.6 Da

IEP (calculated)

9.321

GRAVY (calculated)

-0.494

Length

513 amino acids

Sequence
(BLAST)

001: MSSSPSLEIL VRDAEGFIVW NGPPFSSNGQ PTPKNERVSC SSTKFSLDGS KFMAVKSDGT ISIYDSPSLG EVRSFAVANV TATEISPCGT YLQTFQKPTT
101: PQEKNVSLWN TDTGDLAHSL YQKSITKTTW PSIRFSPDES SACRLATNEV QFFDPKDFSK GITSRIRVPG VAAFELSKTP ASHVAVFVPE VKGSPGSVQI
201: FGCGKDAESQ PSARRSFFRC SSVQFSWNHG STGLLVVVQS DVDKTNKSYY GETKLHYLTV DGTHEGLVPL RKEGPVHDVQ WSFSGSEFAV VYGFMPACVT
301: IFDKKCKPLM ELGEGPYNTL RWNPKGRILC VAGFGNLPGD MTFWDVVSKK QLGSNKAEWS VTSEWSPDGR YFLTASTAPR RQIDNGIKIF NYDGKRYFKK
401: MFERLYQVEW KPESPDRFDE ISELLKSVES LKLEEGKSQG QGSSQKKPVA SIPTIQRPAA YRPPHAKQAA AIQAELLGVN PEGEMSKNAL RNKKKREKKK
501: AAEAAAASGS NNA

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.