CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50214	Soybean	nucleus	88.03	88.2
KRH66844	Soybean	cytosol	11.2	74.36
GSMUA_Achr6P28750_001	Banana	nucleus	65.83	65.45
AT1G73180.1	Thale cress	cytosol	64.48	65.11
CDX68240	Canola	nucleus	62.93	63.55
VIT_05s0094g00460.t01	Wine grape	nucleus	70.66	63.43
Bra003854.1-P	Field mustard	nucleus	62.74	63.35
Solyc08g014060.2.1	Tomato	plastid	68.92	61.45
HORVU6Hr1G055460.11	Barley	nucleus, plastid	60.81	60.46
TraesCS6A01G216300.2	Wheat	nucleus	60.04	60.27
TraesCS6B01G246600.1	Wheat	plastid	60.42	60.08
EES05393	Sorghum	nucleus	60.62	60.04
Zm00001d017150_P001	Maize	nucleus	58.69	58.13
CDY11124	Canola	mitochondrion	61.78	56.44
TraesCS6D01G199300.3	Wheat	plastid	59.07	50.33
Os02t0606100-00	Rice	nucleus, plasma membrane	10.23	46.09
KRH75983	Soybean	cytosol	5.21	20.77
KRH64883	Soybean	endoplasmic reticulum	19.11	13.79
KRH48727	Soybean	endoplasmic reticulum	18.73	13.51
KRH61614	Soybean	endoplasmic reticulum	15.25	13.28

Protein Annotations

EntrezGene:100811589	MapMan:17.4.3.1	Gene3D:2.130.10.10	EMBL:ACUP02000880	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G137200
GO:GO:0000049	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0006413	GO:GO:0006417	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627
GO:GO:0043022	UniProt:I1JEZ2	InterPro:IPR015943	EnsemblPlants:KRH71216	ProteinID:KRH71216	ProteinID:KRH71216.1
PFAM:PF08662	PIRSF:PIRSF017222	PANTHER:PTHR13227	SUPFAM:SSF82171	InterPro:TIF2A	InterPro:TIF_beta_prop-like
UniParc:UPI0002337B71	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:14188791..14194760

Molecular Weight (calculated)

56731.2 Da

IEP (calculated)

9.112

GRAVY (calculated)

-0.425

Length

518 amino acids

Sequence
(BLAST)

001: MASNNHSPPL EILVRGPEDF SLWTGPPFAN GQPSIKLEKV KCINAKFSDD GSKLMVTKSN SLISVYDCRI AEEIRAFEVP NVVAAALSPN GTYLQTFQKP
101: SAPQEKNVTL WSIETGAAVH QQSQKNMTKA NWPAIQFSSD EATACRLATN EVQFFDTGDF SKGVVCRLRV PGVAAAELSS LPGSHVAAFV PESKGVPASV
201: QIFACGNASQ SQPVARRSFF RCSTTQLKWN HGSTGLLVVV QSDVDKTNQS YYGESKLCYL TTDGMHEGLV PLRKDGPIHD AQWSYSGLEF AVVYGFMPAK
301: ATLFDKKCNP LLELGTGPYN TIRWNPKGKF LCLAGFGNLP GDMVFWDYID KKQLGATKAE WSVTSEWSPD GCYFMTATTA PRLQVDNGIK IFHYNGSLYF
401: KKMFDKLYQV DWKPESPGKF GDIAELIKSL NLVQLEDKKP SGQGPPKSTQ TSTKASSANP TTQKPAAYRP PHAKNASAIQ AELFGETTAE TLSKNALRNK
501: KKREKQKEKK AASDASSS

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.