CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017150_P001	Maize	nucleus	95.79	95.79
Os02t0606100-00	Rice	nucleus, plasma membrane	17.78	80.87
TraesCS6A01G216300.2	Wheat	nucleus	79.16	80.23
HORVU6Hr1G055460.11	Barley	nucleus, plastid	79.16	79.46
TraesCS6B01G246600.1	Wheat	plastid	78.97	79.27
TraesCS6D01G199300.3	Wheat	plastid	76.67	65.95
GSMUA_Achr6P28750_001	Banana	nucleus	62.52	62.76
KRH71216	Soybean	nucleus	60.04	60.62
KRH50214	Soybean	nucleus	59.66	60.35
AT1G73180.1	Thale cress	cytosol	58.51	59.65
CDX68240	Canola	nucleus	56.98	58.09
Bra003854.1-P	Field mustard	nucleus	56.79	57.89
VIT_05s0094g00460.t01	Wine grape	nucleus	60.42	54.77
Solyc08g014060.2.1	Tomato	plastid	59.66	53.7
CDY11124	Canola	mitochondrion	54.88	50.62
EER91898	Sorghum	cytosol	17.4	12.64

Protein Annotations

MapMan:17.4.3.1	Gene3D:2.130.10.10	EntrezGene:8056502	UniProt:C5XX81	ncoils:Coil	EnsemblPlants:EES05393
ProteinID:EES05393	ProteinID:EES05393.1	GO:GO:0000049	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0005886	GO:GO:0006412
GO:GO:0006413	GO:GO:0006417	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022627	GO:GO:0043022	InterPro:IPR015943
PFAM:PF08662	PIRSF:PIRSF017222	PANTHER:PTHR13227	EnsemblPlantsGene:SORBI_3004G208500	SUPFAM:SSF82171	unigene:Sbi.19848
InterPro:TIF2A	InterPro:TIF_beta_prop-like	UniParc:UPI0001A852C6	InterPro:WD40/YVTN_repeat-like_dom_sf	RefSeq:XP_002452417.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:55840759..55845719

Molecular Weight (calculated)

57122.0 Da

IEP (calculated)

9.429

GRAVY (calculated)

-0.394

Length

523 amino acids

Sequence
(BLAST)

001: MASPPPALEI LVREPDGCTV WSGPPYPPGT TTPPQRLPKT ACSATSFSTD GARLLATVAS ASATVYDCRT LAVVKCFELP GLLAAALSPT GAYLQTFQKS
101: SSPQEKNVTV WHVDSAAALY QHYQKSMSKA TWPMVQFSAD ESVACRMMPN EIQFFDPKDF AKGILYRIRM PGIATMQLAT APGSHVAGFV PEAKGVPASV
201: QIFSCNKDTQ NQVVARRSFF RCSTVQLHWN KGSTGLLVLV QADVDKTNQS YYGETKLNYL TTDRAFEGIV PLKKDGPVHD VQWSSSGSEF AVVYGFMPAK
301: ATIFNKKCNP LVELGEGPYN TIRWNPKGRF VVLAGFGNLP GDMAFWDYSE KKLVAKTKAE CSVTSEWSPD GRHFMTATTA PRLQIDNCIK IFDHNGSLQF
401: KKMFERLYQA DWKPEVPERF SDIADLTTSL STLKIEETKK QVSAQGSKSA QTASKAPANT APKPTAYRPP HAKGSAELQD KLFGGLAPAG GEMSKNALRN
501: KKRREKQKEK KAAEASGSPA DES

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.