Factsheet for Zm00001d017150_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05393	Sorghum	nucleus	95.79	95.79
Os02t0606100-00	Rice	nucleus, plasma membrane	17.59	80.0
TraesCS6A01G216300.2	Wheat	nucleus	77.63	78.68
HORVU6Hr1G055460.11	Barley	nucleus, plastid	77.25	77.54
TraesCS6B01G246600.1	Wheat	plastid	77.25	77.54
TraesCS6D01G199300.3	Wheat	plastid	75.53	64.97
GSMUA_Achr6P28750_001	Banana	nucleus	61.57	61.8
KRH71216	Soybean	nucleus	58.13	58.69
AT1G73180.1	Thale cress	cytosol	57.55	58.67
KRH50214	Soybean	nucleus	57.55	58.22
CDX68240	Canola	nucleus	55.64	56.73
Bra003854.1-P	Field mustard	nucleus	55.45	56.53
VIT_05s0094g00460.t01	Wine grape	nucleus	58.7	53.21
Solyc08g014060.2.1	Tomato	plastid	57.94	52.15
CDY11124	Canola	mitochondrion	53.54	49.38
Zm00001d030011_P001	Maize	plasma membrane	16.63	12.08

Protein Annotations

EntrezGene:100304267	MapMan:17.4.3.1	Gene3D:2.130.10.10	ProteinID:AQK72440.1	EMBL:BT060641	UniProt:C0HE85
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006412	GO:GO:0006413
GO:GO:0006417	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0019538	InterPro:IPR015943	PFAM:PF08662	PIRSF:PIRSF017222	PANTHER:PTHR13227
SUPFAM:SSF82171	InterPro:TIF2A	InterPro:TIF_beta_prop-like	UniParc:UPI000194898E	InterPro:WD40/YVTN_repeat-like_dom_sf	EnsemblPlantsGene:Zm00001d017150
EnsemblPlants:Zm00001d017150_P001	EnsemblPlants:Zm00001d017150_T001	SEG:seg	:	:	:

Description

Eukaryotic translation initiation factor eIF2A family protein

Coordinates

chr5:+:187067600..187073321

Molecular Weight (calculated)

57082.0 Da

IEP (calculated)

9.586

GRAVY (calculated)

-0.389

Length

523 amino acids

Sequence
(BLAST)

001: MASPPPALEI LVREPDGVTV WSGPPYPPGT TSPPQRLPKT ACSATSFSTD GARLLATVAS ASATVYDCRT LAVVKCFELP GLLAAALSPT GAYLQTFQKS
101: SSPQEKNVTV WHVDTAAALY QHYQKSMSKT TWPMVQFSAD ESVACRMMPN EIQFFDPKDF AKGILYRIRM PGIATMKLAT APGSHVAGFV PEAKGVPASV
201: QIFSCNKDAQ NQVVARRSFF RCSTVQLQWN KGSTGLLILA QADVDKTNQS YYGETKLNYL TTDRAFEGIV PLKKDGPVHD VQWSSSGSEF AVVYGVMPPK
301: ATIFNKKCNP LVEFGEGPYN TIRWNPKGRF VVLAGFGNLP GDMAFWDYSE KKLVAKTKAE CSVTSEWSPD GRHFMTATTA PRLQIDNCIK IFDHNGSLQF
401: KKMFERLYQA DWKPEAAERF TDIADLTTSL STLKIEETKK QVSAQGSKSA QTSSKAPAIT APKPTAYRPP HAKGSAELQD KLFGGLAPAG GEMSKNALRN
501: KKRREKQKEK KAAEASGSPA DES

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.