Factsheet for Zm00001d030011_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002166_P004
Zm00001d002169_P006
Zm00001d002737_P002
Zm00001d020935_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	Zm00001d002166_P004	AT3G56150.1	11029466
AT5G25780.1	Zm00001d002169_P006	AT3G56150.1	11029466
AT5G25780.1	Zm00001d002737_P002	AT3G56150.1	11029466
AT5G25780.1	Zm00001d020935_P002	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91898	Sorghum	cytosol	96.67	96.67
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	88.33	88.46
TraesCS5A01G442500.1	Wheat	cytosol, golgi	85.14	85.73
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	85.83	85.71
HORVU5Hr1G106440.1	Barley	cytosol	85.56	85.44
TraesCS5B01G446600.1	Wheat	cytosol	85.56	85.44
HORVU4Hr1G014100.3	Barley	cytosol	83.33	83.22
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	82.64	82.52
TraesCS4A01G232600.1	Wheat	cytosol	82.22	82.11
TraesCS4B01G083200.1	Wheat	cytosol	80.14	81.84
GSMUA_Achr11P...	Banana	cytosol	78.33	81.27
TraesCS6B01G307400.1	Wheat	cytosol	77.64	81.25
VIT_04s0008g07070.t01	Wine grape	cytosol	78.33	78.55
KRH48727	Soybean	endoplasmic reticulum	76.81	77.02
KRH64883	Soybean	endoplasmic reticulum	76.67	76.88
PGSC0003DMT400004200	Potato	cytosol	75.28	75.59
Solyc01g088370.2.1	Tomato	nucleus, plastid	74.58	74.9
KRH61614	Soybean	endoplasmic reticulum	60.0	72.61
VIT_04s0008g07060.t01	Wine grape	mitochondrion	10.0	72.0
CDY34755	Canola	cytosol	70.0	70.59
Bra007832.1-P	Field mustard	cytosol	70.0	70.59
CDX76792	Canola	cytosol	69.72	70.31
CDY36167	Canola	cytosol	69.31	69.89
CDY45599	Canola	cytosol	69.17	69.75
Bra032059.1-P	Field mustard	cytosol	69.17	69.75
AT5G25780.1	Thale cress	cytosol	68.89	69.47
AT5G27640.2	Thale cress	cytosol	70.56	68.83
TraesCS6D01G406100.1	Wheat	cytosol	39.72	62.31
AT1G49015.1	Thale cress	cytosol	16.39	51.98
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	47.92	38.85
CDX88073	Canola	cytosol	26.39	37.48
Bra009732.1-P	Field mustard	cytosol	26.39	37.48
CDX80412	Canola	cytosol	25.97	37.03
CDX94125	Canola	endoplasmic reticulum, golgi	17.5	36.42
CDY66663	Canola	mitochondrion	8.61	35.03
Zm00001d017150_P001	Maize	nucleus	12.08	16.63
KRH66844	Soybean	cytosol	1.39	12.82

Protein Annotations

EntrezGene:100216593	MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	EMBL:BT064159	UniProt:C0P790
ncoils:Coil	InterPro:EIF3B	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR015943	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONL99974.1	PFAM:PF00076
PFAM:PF08662	PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	UniParc:UPI0001948CF1	InterPro:WD40/YVTN_repeat-like_dom_sf
EnsemblPlantsGene:Zm00001d030011	EnsemblPlants:Zm00001d030011_P001	EnsemblPlants:Zm00001d030011_T001	InterPro:eIF3B_RRM	SEG:seg	:

Description

Eukaryotic translation initiation factor 3 subunit B

Coordinates

chr1:-:99113829..99118558

Molecular Weight (calculated)

83003.9 Da

IEP (calculated)

4.855

GRAVY (calculated)

-0.576

Length

720 amino acids

Sequence
(BLAST)

001: MALSVSMEGI EARARDLGVD LSAVDLDSIT LPAGEDFGIV SDDEEVLRGE DLPELEMGLS NIIVVDNLPV VPPEKFEKLE NVIRKIYSQI GAIKENGLWM
101: PVNPETKKTY GYCFIEYSTP QEAELAREKT NGYKLDKSHI FAVNLLDDFE KYMKVPDTWT PAEIKPYTAG ENLLKWLTDE KARDQFVIRA GTLTEVYWND
201: ARKLAPELVF QKQYWTDSFI QWSPLGTYMA TVHRQGSQVW GGENGFERLM RFAHSMVKLI DFSPGERYLV TYSSHEPSNP RDTHRVVLNI FDVRTGKVMR
301: DFKGSADDFT TGGNIGVSGV SWPIFRWGGG KDDKYFARLG KNIISVYETD TFSLLDKKSL KVENVVDFSW SPTDPIISLF VPEMGGGNQP ARVSLVQIPG
401: KEELRQKNLF SVSDCKMYWQ NSGEYLAVQV DRYTKTKKST YTGFELFRIK ERDIPIEVLE LENKNDKIIA FAWEPKGHRF AIIHGDGPKP DVSFYTMRTS
501: NNTSRVSKLT TLKAKQANTL YWSPAGRFIV LAGLKGFNGQ LEFYNVDELE TMATGEHFMA TDIMWDPTGR YLATAVTSVH EMENGFQIWS FSGKHLYKVS
601: KDHFYQFIWR PRPPSLLTAE KEEEISRNLK KYSKKYEQED QDAFNQLSEQ DRKRRTQLQE EWDSWVAKWK QMHEEERAYR RELRDGEASD DEEEYEAKEV
701: EVEEVVDVRQ EVLAFDLDQE

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.