Factsheet for HORVU5Hr1G106440.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G058370.1
HORVU2Hr1G058390.1
HORVU5Hr1G063770.2
HORVU5Hr1G098600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	HORVU2Hr1G058370.1	AT3G56150.1	11029466
AT5G25780.1	HORVU2Hr1G058390.1	AT3G56150.1	11029466
AT5G25780.1	HORVU5Hr1G063770.2	AT3G56150.1	11029466
AT5G25780.1	HORVU5Hr1G098600.1	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G442500.1	Wheat	cytosol, golgi	97.92	98.74
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	98.61	98.61
TraesCS5B01G446600.1	Wheat	cytosol	98.61	98.61
HORVU4Hr1G014100.3	Barley	cytosol	94.45	94.45
EER91898	Sorghum	cytosol	86.41	86.53
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	86.27	86.51
Zm00001d030011_P001	Maize	plasma membrane	85.44	85.56
GSMUA_Achr11P...	Banana	cytosol	77.12	80.12
VIT_04s0008g07070.t01	Wine grape	cytosol	78.09	78.41
PGSC0003DMT400004200	Potato	cytosol	75.45	75.87
KRH48727	Soybean	endoplasmic reticulum	75.31	75.63
KRH64883	Soybean	endoplasmic reticulum	75.03	75.35
Solyc01g088370.2.1	Tomato	nucleus, plastid	74.9	75.31
VIT_04s0008g07060.t01	Wine grape	mitochondrion	10.12	73.0
KRH61614	Soybean	endoplasmic reticulum	59.22	71.76
CDY34755	Canola	cytosol	69.9	70.59
Bra007832.1-P	Field mustard	cytosol	69.76	70.45
CDX76792	Canola	cytosol	69.63	70.31
AT5G25780.1	Thale cress	cytosol	69.49	70.17
CDY45599	Canola	cytosol	69.21	69.89
Bra032059.1-P	Field mustard	cytosol	69.21	69.89
CDY36167	Canola	cytosol	69.07	69.75
AT5G27640.2	Thale cress	cytosol	70.6	68.97
AT1G49015.1	Thale cress	cytosol	16.23	51.54
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	48.96	39.75
Bra009732.1-P	Field mustard	cytosol	25.66	36.49
CDX88073	Canola	cytosol	25.66	36.49
CDX94125	Canola	endoplasmic reticulum, golgi	17.34	36.13
CDX80412	Canola	cytosol	25.24	36.04
CDY66663	Canola	mitochondrion	8.74	35.59
HORVU6Hr1G055460.11	Barley	nucleus, plastid	12.07	16.7
KRH66844	Soybean	cytosol	1.66	15.38

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	EMBL:AK354403	InterPro:EIF3B	UniProt:F2CS01
GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282
GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	EnsemblPlantsGene:HORVU5Hr1G106440	EnsemblPlants:HORVU5Hr1G106440.1	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR015943	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF08662
PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	UniParc:UPI0002004523	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:eIF3B_RRM
SEG:seg	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F2CS01]

Coordinates

chrchr5H:+:623991059..623995742

Molecular Weight (calculated)

83371.4 Da

IEP (calculated)

4.770

GRAVY (calculated)

-0.578

Length

721 amino acids

Sequence
(BLAST)

001: MALAISMEAI DARARELGID LDSVDVDSIT LPPGEDFDIL SDDEDLLQNE DIPELEMGFS NIIVVDNLPV VPPEKYEKLE NVVRKIYSQI GVIKEGGLWM
101: PTHPETKKTY GYCFIEYNTP QEAELAREKT NGYKLDKSHI FAVNMFDDFE KYMKVPDEWA PAEIKPYTPG ENLLKWLTDD KARDQFVIRA GTFTEVYWND
201: ARRAMPELVY QKQYWTDSYI QWSPLGTHLA TVHRQGAQVW GGDDKFVRLM RFAHPQVKLI DFSPGEKYLI TYSSQEPSNP RDTHRVLLNI FDVRTGKVMR
301: DFKGSADDFT TGGNMGVSGV SWPIFRWGGG RDDKYFARLG KNVISVYETE TFSLIEKKSL KVENVVDFSW SPTDPIISLF VPELGGGNQP ARVSLVQIPG
401: KEEIRQKNLF SVSDCKMYWQ NNGEYLAVQV DRYTKTKKSI YTGFELFRIK ERDIPIEVFE LDNKNDKIIA FAWEPKGHRF AVIHGDGPKP DISFYTMRAV
501: NNNVSRVSKL TTLKGKQANA LFWSPAGRFI VLAGLKGFNG QLEFFNVDDL ETMATGEHFM ATDIMWDPTG RFLATAVTSV HEMENGFQIW SFNGKLIYKI
601: SKDHFYQFQW RPRPPSLLTP EKEEDISKNL KRYSKKYEQE DQDVSNQVGE QERKRRTQLQ EEWLAWVAKW KQLHEEERSY RMELRGGEES DKEEEAEYKE
701: IEAEELVDVT EEIVAFDLDQ E

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.