Factsheet for Bra009732.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88073	Canola	cytosol	97.44	97.44
VIT_04s0008g07060.t01	Wine grape	mitochondrion	7.89	40.0
Bra007832.1-P	Field mustard	cytosol	39.45	28.01
Bra032059.1-P	Field mustard	cytosol	38.66	27.45
GSMUA_Achr11P...	Banana	cytosol	37.48	27.38
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	37.87	26.7
Zm00001d030011_P001	Maize	plasma membrane	37.48	26.39
PGSC0003DMT400004200	Potato	cytosol	37.28	26.36
EER91898	Sorghum	cytosol	37.28	26.25
Solyc01g088370.2.1	Tomato	nucleus, plastid	37.08	26.22
KRH64883	Soybean	endoplasmic reticulum	36.88	26.04
TraesCS5A01G442500.1	Wheat	cytosol, golgi	36.69	26.01
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	36.69	25.8
TraesCS5B01G446600.1	Wheat	cytosol	36.69	25.8
HORVU5Hr1G106440.1	Barley	cytosol	36.49	25.66
KRH48727	Soybean	endoplasmic reticulum	36.29	25.63
TraesCS4B01G083200.1	Wheat	cytosol	35.5	25.53
TraesCS4A01G232600.1	Wheat	cytosol	36.29	25.52
HORVU4Hr1G014100.3	Barley	cytosol	36.09	25.38
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	35.7	25.1
KRH61614	Soybean	endoplasmic reticulum	28.99	24.71
TraesCS6B01G307400.1	Wheat	cytosol	33.33	24.56
TraesCS6D01G406100.1	Wheat	cytosol	18.54	20.48
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	34.91	19.93
Bra003854.1-P	Field mustard	nucleus	15.38	15.2
KRH66844	Soybean	cytosol	2.17	14.1

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra009732	EnsemblPlants:Bra009732.1	EnsemblPlants:Bra009732.1-P	InterPro:EIF3B
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0031369	InterPro:IPR015943	UniProt:M4CZT5	PFAM:PF08662	PANTHER:PTHR14068
SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	UniParc:UPI000253F166	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg	:

Description

AT5G27640 (E=5e-095) TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1 | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1); nucleic acid binding / translation initiation factor

Coordinates

chrA06:-:16897259..16899471

Molecular Weight (calculated)

57433.0 Da

IEP (calculated)

5.162

GRAVY (calculated)

-0.334

Length

507 amino acids

Sequence
(BLAST)

001: MADAEVERRM RGDTCTISTR RRTYRRIESK AGSSRSPEES YLQFIKIETK NPPTSIPCSS SLTRRFFDRP LDSKCFNVGV GALDQLFIRD GTLDKLIWND
101: NWSVDETVSF FRYPADKKLP SRWSPLGSFF VSSNYNLVII WGSRYYTDFG RLMRFNHYQV EEFDISPGEK YLVTYNRPDP TDPNGLWLKI FDVSTGTGIV
201: GLNNADVADS PQWPVIRWAG GKDDTYFATL SKSNTVSVYE TKTFNLLGKA PLKLDDVIDI SWSPTEAVLA ILCGEKPLKV LLLQIPDEVK LAEKEITAIV
301: GDCKMHWQSN GEYLAVNTYG GFEFFRIKEK GIPTDFLKVD KKILAFAWEP SGHRFAVIYG DEPTLSVSFY SMKTPGKVTE LTTLSNKQAD SLFWSPNGNL
401: VVLAGLKEGK LEFFDVDRLA QISSVANVKA NQVVWNPSGK YVATVSTIPQ EEFDSDWCSD PNDPLDRFTI WSSGGDCLFV HQCQNRIMQL DWRPYGGIID
501: DDMVKTQ

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.