Factsheet for HORVU4Hr1G014100.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G058370.1
HORVU2Hr1G058390.1
HORVU5Hr1G063770.2
HORVU5Hr1G098600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	HORVU2Hr1G058370.1	AT3G56150.1	11029466
AT5G25780.1	HORVU2Hr1G058390.1	AT3G56150.1	11029466
AT5G25780.1	HORVU5Hr1G063770.2	AT3G56150.1	11029466
AT5G25780.1	HORVU5Hr1G098600.1	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G232600.1	Wheat	cytosol	95.56	95.56
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	95.42	95.42
TraesCS4B01G083200.1	Wheat	cytosol	93.07	95.18
TraesCS6B01G307400.1	Wheat	cytosol	90.15	94.48
HORVU5Hr1G106440.1	Barley	cytosol	94.45	94.45
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	84.6	84.84
EER91898	Sorghum	cytosol	84.47	84.58
Zm00001d030011_P001	Maize	plasma membrane	83.22	83.33
GSMUA_Achr11P...	Banana	cytosol	76.28	79.25
VIT_04s0008g07070.t01	Wine grape	cytosol	77.12	77.44
PGSC0003DMT400004200	Potato	cytosol	74.9	75.31
Solyc01g088370.2.1	Tomato	nucleus, plastid	74.48	74.9
KRH48727	Soybean	endoplasmic reticulum	74.34	74.65
KRH64883	Soybean	endoplasmic reticulum	74.06	74.37
VIT_04s0008g07060.t01	Wine grape	mitochondrion	9.99	72.0
CDY34755	Canola	cytosol	70.04	70.73
Bra007832.1-P	Field mustard	cytosol	69.9	70.59
KRH61614	Soybean	endoplasmic reticulum	58.25	70.59
CDX76792	Canola	cytosol	69.76	70.45
Bra032059.1-P	Field mustard	cytosol	69.35	70.03
CDY45599	Canola	cytosol	69.35	70.03
CDY36167	Canola	cytosol	69.21	69.89
AT5G25780.1	Thale cress	cytosol	69.07	69.75
AT5G27640.2	Thale cress	cytosol	70.18	68.56
AT1G49015.1	Thale cress	cytosol	15.95	50.66
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	47.85	38.85
CDX94125	Canola	endoplasmic reticulum, golgi	17.34	36.13
CDX88073	Canola	cytosol	25.38	36.09
Bra009732.1-P	Field mustard	cytosol	25.38	36.09
CDX80412	Canola	cytosol	24.97	35.64
CDY66663	Canola	mitochondrion	8.74	35.59
HORVU6Hr1G055460.11	Barley	nucleus, plastid	12.21	16.89
KRH66844	Soybean	cytosol	1.66	15.38

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	UniProt:A0A287NAI4	InterPro:EIF3B	GO:GO:0001732
GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290
EnsemblPlantsGene:HORVU4Hr1G014100	EnsemblPlants:HORVU4Hr1G014100.3	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR015943	HAMAP:MF_03001
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF08662	PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like
UniParc:UPI000B47F51D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:eIF3B_RRM	SEG:seg	:	:

Description

Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:A0A287NAI4]

Coordinates

chrchr4H:+:51126664..51131345

Molecular Weight (calculated)

83249.5 Da

IEP (calculated)

4.820

GRAVY (calculated)

-0.533

Length

721 amino acids

Sequence
(BLAST)

001: MALAISMEAI DARARELGID LDSVDLDSIT LPPGEDFDIL SDDEDLLQNE DIPELEMGFA NIIVVDNLPV VPPEKYEKLE NVLRKIYGQL GVIKEGGLWM
101: PTDPKTKKTL GYCFIEYNTP QEAELAVEKT HGYKLDKSHI FAVNMFDDFE KYMKVPDEWA PAEIKPYTPG ENLLKWLTDD KARDQFVIRA STFTEVYWND
201: ARRAMPELVY QKQYWTDSYI QWSPLGTHLA TVHRQGAQVW GGDDKFVRLM RFAHPQLKLI DFSPGEKYLI TYSSHEPSNP RDTHRVVLII FDVRTGKVMR
301: EFKGSADDFT TGGNMGVSGV SWPIFRWGGG TDDKYFARLG KNVISVYDTE TFALIDKKSL KVENVVDFSW SPTDPIISLF VPELGGGNQP ARVSLVQIPG
401: KEEIRQKNLF SVSDCKMYWQ NNGEYLAVQV DRYTKTKKSI YTGFELFRIK ERDIPIEVFE LDNKNDKIIA FAWEPKGHRF AVIHGDGPKP DISFYTMKAV
501: NNNVSRVSKL TTLKGKQANA LFWSPAGRFI VLAGLKGFNG QLEFFNVDDL ETMATGEHFM ATDIMWDPTG RYLATAVTSV HEMENGFHIW SFNGKLIYKI
601: SKDHFYQFQW RPRPPSLLTP EKEEDISKNL KRYSKKYEQE DQDVNAHLDL EERKRRMQLQ EVWESWVTKW KQLHEEERAF RMQLRGGEDS DKEEEAEYKE
701: IEAEELVDVT EETVAFDLDQ E

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.