Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G25780.1 | Thale cress | cytosol | 91.87 | 94.96 |
| CDY34755 | Canola | cytosol | 89.16 | 92.16 |
| Bra032059.1-P | Field mustard | cytosol | 89.02 | 92.02 |
| CDY45599 | Canola | cytosol | 89.02 | 92.02 |
| Bra007832.1-P | Field mustard | cytosol | 88.89 | 91.88 |
| CDY36167 | Canola | cytosol | 88.75 | 91.74 |
| CDX76792 | Canola | cytosol | 88.62 | 91.6 |
| KRH64883 | Soybean | endoplasmic reticulum | 73.98 | 76.04 |
| VIT_04s0008g07060.t01 | Wine grape | mitochondrion | 10.3 | 76.0 |
| KRH48727 | Soybean | endoplasmic reticulum | 73.85 | 75.91 |
| PGSC0003DMT400004200 | Potato | cytosol | 73.58 | 75.73 |
| Solyc01g088370.2.1 | Tomato | nucleus, plastid | 73.58 | 75.73 |
| GSMUA_Achr11P... | Banana | cytosol | 69.78 | 74.21 |
| KRH61614 | Soybean | endoplasmic reticulum | 57.99 | 71.93 |
| Os10t0569200-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 69.92 | 71.77 |
| EER91898 | Sorghum | cytosol | 69.38 | 71.11 |
| TraesCS5A01G442500.1 | Wheat | cytosol, golgi | 68.7 | 70.91 |
| HORVU5Hr1G106440.1 | Barley | cytosol | 68.97 | 70.6 |
| Zm00001d030011_P001 | Maize | plasma membrane | 68.83 | 70.56 |
| TraesCS5D01G449900.2 | Wheat | cytosol, nucleus, unclear | 68.7 | 70.32 |
| HORVU4Hr1G014100.3 | Barley | cytosol | 68.56 | 70.18 |
| TraesCS5B01G446600.1 | Wheat | cytosol | 68.56 | 70.18 |
| TraesCS4B01G083200.1 | Wheat | cytosol | 66.67 | 69.79 |
| TraesCS4D01G081300.1 | Wheat | cytosol, nucleus | 68.16 | 69.76 |
| TraesCS4A01G232600.1 | Wheat | cytosol | 68.02 | 69.63 |
| TraesCS6B01G307400.1 | Wheat | cytosol | 64.09 | 68.75 |
| AT1G49015.1 | Thale cress | cytosol | 17.07 | 55.51 |
| TraesCS6D01G406100.1 | Wheat | cytosol | 31.84 | 51.2 |
| HORVU5Hr1G008250.6 | Barley | cytosol, mitochondrion, plastid | 41.19 | 34.23 |
| AT1G73180.1 | Thale cress | cytosol | 12.33 | 17.74 |
| KRH66844 | Soybean | cytosol | 1.36 | 12.82 |
Protein Annotations
| MapMan:17.4.1.3.2 | Gene3D:2.130.10.10 | Gene3D:3.30.70.330 | EntrezGene:832826 | ProteinID:AED93710.1 | ArrayExpress:AT5G27640 |
| EnsemblPlantsGene:AT5G27640 | RefSeq:AT5G27640 | TAIR:AT5G27640 | RefSeq:AT5G27640-TAIR-G | EnsemblPlants:AT5G27640.2 | TAIR:AT5G27640.2 |
| Unigene:At.49071 | InterPro:EIF3B | UniProt:F4K4D5 | GO:GO:0001731 | GO:GO:0001732 | GO:GO:0002183 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006446 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016282 | GO:GO:0019538 |
| GO:GO:0031369 | GO:GO:0033290 | InterPro:IPR012677 | InterPro:IPR015943 | HAMAP:MF_03001 | RefSeq:NP_001031954.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF08662 | PIRSF:PIRSF036424 | PO:PO:0000005 | PO:PO:0000293 | PO:PO:0009010 |
| PANTHER:PTHR14068 | SUPFAM:SSF82171 | Symbol:TIF3B1 | InterPro:TIF_beta_prop-like | UniParc:UPI00005DC127 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:eIF3B_RRM | SEG:seg | : | : | : | : |
Description
TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
Coordinates
chr5:-:9781010..9785288
Molecular Weight (calculated)
84918.4 Da
IEP (calculated)
4.959
GRAVY (calculated)
-0.540
Length
738 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQKGAQ TRLFLMVEYF LRVSLNVWGS LQEAQNAKEK SHGYKLDKSH IFAVNMFDDF DRLMNVKEEW EPPQARPYVP GENLQKWLTD
201: EKARDQLVIR SGPDTEVFWN DTRQKAPEPV HKRPYWTESY VQWSPLGTYL VTLHKQGAAV WGGADTFTRL MRYQHSMVKL VDFSPGEKYL VTYHSQEPSN
301: PRDASKVEIK VFDVRTGRMM RDFKGSADEF SIGGPGGVAG ASWPVFRWAG GKDDKYFAKL SKNTISVYET ETFSLIDKKS MKVDNVVDIC WSPTDSILSL
401: FVPEQGGGNQ PAKVALVQIP SKVELRQKNL FSVSDCKMYW QSSGEYLAVK VDRYTKTKKS TYSGFELFRI KERDIPIEVL ELDNKNDKII AFAWEPKGHR
501: FAVIHGDQPR PDVSFYSMKT AQNTGRVSKL ATLKAKQANA LFWSPTGKYI ILAGLKGFNG QLEFFNVDEL ETMATAEHFM ATDIEWDPTG RYVATAVTSV
601: HEMENGFTIW SFNGIMLYRI LKDHFFQLAW RPRPPSFLTA EKEEEIAKTL KKYSKKYEAE DQDVSLLLSE QDREKRKALK EEWEKWVMQW KSLHEEEKLV
701: RQNLRDGEVS DVEEDEYEAK EVEFEDLIDV TEEIVQES
101: TKMTLGYCFI EFNTPQKGAQ TRLFLMVEYF LRVSLNVWGS LQEAQNAKEK SHGYKLDKSH IFAVNMFDDF DRLMNVKEEW EPPQARPYVP GENLQKWLTD
201: EKARDQLVIR SGPDTEVFWN DTRQKAPEPV HKRPYWTESY VQWSPLGTYL VTLHKQGAAV WGGADTFTRL MRYQHSMVKL VDFSPGEKYL VTYHSQEPSN
301: PRDASKVEIK VFDVRTGRMM RDFKGSADEF SIGGPGGVAG ASWPVFRWAG GKDDKYFAKL SKNTISVYET ETFSLIDKKS MKVDNVVDIC WSPTDSILSL
401: FVPEQGGGNQ PAKVALVQIP SKVELRQKNL FSVSDCKMYW QSSGEYLAVK VDRYTKTKKS TYSGFELFRI KERDIPIEVL ELDNKNDKII AFAWEPKGHR
501: FAVIHGDQPR PDVSFYSMKT AQNTGRVSKL ATLKAKQANA LFWSPTGKYI ILAGLKGFNG QLEFFNVDEL ETMATAEHFM ATDIEWDPTG RYVATAVTSV
601: HEMENGFTIW SFNGIMLYRI LKDHFFQLAW RPRPPSFLTA EKEEEIAKTL KKYSKKYEAE DQDVSLLLSE QDREKRKALK EEWEKWVMQW KSLHEEEKLV
701: RQNLRDGEVS DVEEDEYEAK EVEFEDLIDV TEEIVQES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.