Factsheet for TraesCS5D01G449900.2

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, unclear
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G220000.1
TraesCS5A01G406000.1
TraesCS5B01G219100.1
TraesCS5B01G410800.1
TraesCS5D01G228100.1
TraesCS5D01G416000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	TraesCS5A01G220000.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5A01G406000.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5B01G219100.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5B01G410800.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5D01G228100.1	AT3G56150.1	11029466
AT5G25780.1	TraesCS5D01G416000.1	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G446600.1	Wheat	cytosol	99.72	99.72
TraesCS5A01G442500.1	Wheat	cytosol, golgi	98.75	99.58
HORVU5Hr1G106440.1	Barley	cytosol	98.61	98.61
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	93.48	93.48
EER91898	Sorghum	cytosol	86.55	86.67
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	86.27	86.51
Zm00001d030011_P001	Maize	plasma membrane	85.71	85.83
GSMUA_Achr11P...	Banana	cytosol	76.7	79.68
VIT_04s0008g07070.t01	Wine grape	cytosol	78.09	78.41
KRH48727	Soybean	endoplasmic reticulum	75.17	75.49
PGSC0003DMT400004200	Potato	cytosol	74.9	75.31
KRH64883	Soybean	endoplasmic reticulum	74.9	75.21
Solyc01g088370.2.1	Tomato	nucleus, plastid	74.34	74.76
VIT_04s0008g07060.t01	Wine grape	mitochondrion	9.99	72.0
KRH61614	Soybean	endoplasmic reticulum	59.08	71.6
CDY34755	Canola	cytosol	69.63	70.31
Bra007832.1-P	Field mustard	cytosol	69.49	70.17
CDX76792	Canola	cytosol	69.35	70.03
AT5G25780.1	Thale cress	cytosol	69.35	70.03
Bra032059.1-P	Field mustard	cytosol	68.93	69.61
CDY45599	Canola	cytosol	68.93	69.61
CDY36167	Canola	cytosol	68.79	69.47
AT5G27640.2	Thale cress	cytosol	70.32	68.7
TraesCS6D01G406100.1	Wheat	cytosol	40.64	63.83
AT1G49015.1	Thale cress	cytosol	15.95	50.66
Bra009732.1-P	Field mustard	cytosol	25.8	36.69
CDX88073	Canola	cytosol	25.8	36.69
CDX80412	Canola	cytosol	25.38	36.24
CDX94125	Canola	endoplasmic reticulum, golgi	17.34	36.13
CDY66663	Canola	mitochondrion	8.6	35.03
KRH66844	Soybean	cytosol	1.66	15.38
TraesCS6D01G199300.3	Wheat	plastid	11.93	14.14

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	InterPro:EIF3B	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0031369
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR015943	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF08662	PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	EnsemblPlantsGene:TraesCS5D01G449900	EnsemblPlants:TraesCS5D01G449900.2
InterPro:WD40/YVTN_repeat-like_dom_sf	TIGR:cd12278	InterPro:eIF3B_RRM	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:+:498621666..498626129

Molecular Weight (calculated)

83270.3 Da

IEP (calculated)

4.768

GRAVY (calculated)

-0.566

Length

721 amino acids

Sequence
(BLAST)

001: MALAISMEAI DARARELGID LDSVDVDSIT LPPGEDFDIL SDDEDLLQNE DIPELEMGFS NIIVVDNLPV VPPEKYEKLE NVVRKIYSQI GVIKEGGLWM
101: PTHPETKKTY GYCFIEYNTP QEAELAREKT NGYKLDKSHI FAVNMFDDFE KYMKVPDEWA PAEIKPYTPG ENLLKWLTDD KARDQFVIRA GTFTEVYWND
201: ARRAMPELVY QKQYWTDSYI QWSPLGTHLA TVHRQGAQVW GGDDKFVRLM RFAHPQVKLI DFSPGEKYLI TYSSQEPSNP RDTHRVVLNI FDVRTGKVMR
301: DFKGSADDFT TGGNMGVSGV SWPIFRWGGG RDDKYFARLG KNVISVYETD TFSLIDKKSL KVENVVDFSW SPTDPIISLF VPELGGGNQP ARVSLVQIPG
401: KEEIRQKNLF SVSDCKMYWQ NNGEYLAVQV DRYTKTKKSI YTGFELFRIK ERDIPIEVFE LENKNDKIIA FAWEPKGHRF AVIHGDGPKP DISFYTMKAV
501: NNNVSRVSKL TTLKGKQANA LFWSPAGRFI VLAGLKGFNG QLEFFNVDDL ETMATGEHFM ATDIMWDPTG RFLATAVTSV HEMENGFQIW SFNGKLIYKI
601: SKDHFYQFQW RPRPPSLLTP EKEEDISKNL KRYSKKYEQE DLDVSNQVGE LERKRRTQLQ EEWQGWVAKW KQLHEEERAY RMELRGGEES DKEEEAEYKE
701: IEAEELVDVT EEIVAFDLDQ E

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.