CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88073	Canola	cytosol	87.92	87.57
CDX94125	Canola	endoplasmic reticulum, golgi	43.37	63.29
CDY34755	Canola	cytosol	38.81	27.45
CDX76792	Canola	cytosol	38.61	27.31
CDY36167	Canola	cytosol	38.42	27.17
CDY45599	Canola	cytosol	38.22	27.03
GSMUA_Achr11P...	Banana	cytosol	37.03	26.95
Solyc01g088370.2.1	Tomato	nucleus, plastid	37.62	26.5
PGSC0003DMT400004200	Potato	cytosol	37.43	26.36
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	37.23	26.15
EER91898	Sorghum	cytosol	37.23	26.11
Zm00001d030011_P001	Maize	plasma membrane	37.03	25.97
TraesCS5A01G442500.1	Wheat	cytosol, golgi	36.24	25.59
TraesCS5B01G446600.1	Wheat	cytosol	36.24	25.38
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	36.24	25.38
HORVU5Hr1G106440.1	Barley	cytosol	36.04	25.24
TraesCS4B01G083200.1	Wheat	cytosol	35.05	25.11
TraesCS4A01G232600.1	Wheat	cytosol	35.84	25.1
HORVU4Hr1G014100.3	Barley	cytosol	35.64	24.97
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	35.45	24.83
TraesCS6B01G307400.1	Wheat	cytosol	32.87	24.13
TraesCS6D01G406100.1	Wheat	cytosol	18.42	20.26
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	35.05	19.93
CDY66663	Canola	mitochondrion	5.54	15.82
CDX68240	Canola	nucleus	14.85	14.62
CDY11124	Canola	mitochondrion	14.65	13.05
CDY66322	Canola	golgi, plastid	4.95	12.08

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:A0A078CUG2	EnsemblPlants:CDX80412	ProteinID:CDX80412	ProteinID:CDX80412.1
InterPro:EIF3B	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0031369	EnsemblPlantsGene:GSBRNA2T00133478001	InterPro:IPR015943	PFAM:PF08662
PANTHER:PTHR14068	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	UniParc:UPI0004EF1538	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg

Description

BnaC07g30320D

Coordinates

chrLK031821:-:296315..298829

Molecular Weight (calculated)

57473.0 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.375

Length

505 amino acids

Sequence
(BLAST)

001: MADAEVERRM KVMRGDTWTI STRRRTYRRI ESKAGSSRSH KESYIQKERS YLQFIKIETK NPPTSIPCSS SLTRRFFDRP LDSKCFNVGA LDQLFIRDGT
101: LDKLLWNDNW SVDGTVSFFR YPSYKKLPSR WSPLGSFFVT SNYGVVSIWG SRYYTDFGRL MRFSHYQVEE FDISPGEKYL VTYNRPDLTD PNGLWLKIFD
201: VSTGTGIVGL NNGDVADSPQ WPVIRWAGGK DDTYFATLSK NNTVSVYETK NFNLLGKAPL NLDDVIDISW SPTEAVLAIL LKAGGEQHVK TLLLQIPDKL
301: KLAEKDLTAI VGDCKMHWQS NGEYLAVNTY GGFEFFRIKE EGIPTDFLKV DKRILAFAWE PSGHRFAVIY GDEPTLSVSF YSMKTPGKVT ELTTLSNKQA
401: DSLFWSPKGN LVVVAALKEG KLEFFDVDRL AQISSVANVK ANQVVWNPSG EYVATVSTLP QEEFDSDWCS DPNDPLDRFT IWSSGGDCLF VHQCQNRIMQ
501: LDWRP

Best Arabidopsis Sequence Match ( AT1G49015.1 )
(BLAST)

001: MAGVDGHVVD NSWPIIRWAG GKDDKYFATL IKNTTATQEG AAVNFDDVVG MSWSPTEPIL SLLKGDVKNQ PKKVVFLQIP GYVELMHKDI LSVSDCKMYW
101: QSKGKYLAVQ VTRHTCSLFE LFRFNKVQGI TTEALEVDEK ILAFAWEPSG HRFAVIHGDQ SKPNVSFYSM ETPQNPGKVS KLATFDDKEA DALFWSPRGK
201: HIVLAGLKAA SMAISSFSTW ISLRCSR

Arabidopsis Description

DPP6 N-terminal domain-like protein [Source:UniProtKB/TrEMBL;Acc:F4I057]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.