CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003854.1-P	Field mustard	nucleus	85.01	93.96
CDX68240	Canola	nucleus	85.01	93.96
AT1G73180.1	Thale cress	cytosol	72.66	80.31
KRH71216	Soybean	nucleus	56.44	61.78
KRH50214	Soybean	nucleus	55.03	60.35
GSMUA_Achr6P28750_001	Banana	nucleus	53.62	58.35
TraesCS6A01G216300.2	Wheat	nucleus	51.32	56.4
VIT_05s0094g00460.t01	Wine grape	nucleus	56.97	55.98
TraesCS6B01G246600.1	Wheat	plastid	50.79	55.28
Solyc08g014060.2.1	Tomato	plastid	56.61	55.25
HORVU6Hr1G055460.11	Barley	nucleus, plastid	50.62	55.09
EES05393	Sorghum	nucleus	50.62	54.88
Zm00001d017150_P001	Maize	nucleus	49.38	53.54
TraesCS6D01G199300.3	Wheat	plastid	49.56	46.22
CDY66322	Canola	golgi, plastid	10.23	28.02
CDX94125	Canola	endoplasmic reticulum, golgi	11.29	18.5
CDX88073	Canola	cytosol	14.29	15.98
CDX80412	Canola	cytosol	13.05	14.65
CDY34755	Canola	cytosol	16.75	13.31
CDX76792	Canola	cytosol	16.58	13.17
CDY45599	Canola	cytosol	16.05	12.75
CDY36167	Canola	cytosol	16.05	12.75
CDY66663	Canola	mitochondrion	3.17	10.17

Protein Annotations

MapMan:17.4.3.1	Gene3D:2.130.10.10	GO:A0A078FDW1	UniProt:A0A078FDW1	EnsemblPlants:CDY11124	ProteinID:CDY11124
ProteinID:CDY11124.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006413	GO:GO:0006417	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00049110001
InterPro:IPR015943	PFAM:PF08662	PIRSF:PIRSF017222	PANTHER:PTHR13227	SUPFAM:SSF82171	InterPro:TIF2A
InterPro:TIF_beta_prop-like	UniParc:UPI0004EE1CF7	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg	:	:

Description

BnaC06g23760DEukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:A0A078FDW1]

Coordinates

chrLK032009:-:438659..442456

Molecular Weight (calculated)

62317.7 Da

IEP (calculated)

9.971

GRAVY (calculated)

-0.476

Length

567 amino acids

Sequence
(BLAST)

001: MNRVSVNSVR TTFYRTGREP VRYSVVRAKP ATTATDHSPR RSFQVSLSLS SKAMSSSPSL EILVRDAEGF VVWNGPPFSS NGQPTPKNER VSCSSTKFSL
101: DGSKFMAVKS DGTISIYDSA SLREMRSFAV ANVTAAEISP SGTYLQTFQK PTTPQEKNVS LWNIETADLA HGLYQKSITK TTWPSIRFSP DESSACRLAT
201: NEVQFFDPKD FSKGITSRIR VPGVAAFELS KTPASHVAVF VPEVKGSPGS VQIFGCGKEA ESQPSARRSF FRCSSVQFNW NHGSTGLLVV VQSDVDKTNK
301: SYYGETKLHY LTVDGTHEGL VPLRKEGPVH DVQWSFSGSE FAVVYGFMPA CVTIFDKKCK PLMELGEGPY NTLRWNPKGR ILCVAGFGNL PGDMTFWDVV
401: SKKQLGSNKA EWSVTSEWSP DGRYFLTAST APRRQIDNGI KIFNYDGKPL KNIITTCLTK RVEWKPESPD RFDEISELLK SVESLKLEEG KSQGQGSSQK
501: KPVASIPTIQ RPAAYRPPHA KQAAAIQAEL LGVNPEGEMS KNALRNKKKR EKKKAAEAAA ASGSNNA

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.