CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g07060.t01	Wine grape	mitochondrion	21.47	38.0
CDY34755	Canola	cytosol	41.24	10.22
CDY36167	Canola	cytosol	41.24	10.22
CDX76792	Canola	cytosol	40.68	10.08
CDY45599	Canola	cytosol	40.68	10.08
PGSC0003DMT400004200	Potato	cytosol	38.98	9.62
Solyc01g088370.2.1	Tomato	nucleus, plastid	38.42	9.48
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	37.85	9.32
TraesCS6B01G307400.1	Wheat	cytosol	35.03	9.01
TraesCS5A01G442500.1	Wheat	cytosol, golgi	35.59	8.81
TraesCS4B01G083200.1	Wheat	cytosol	35.03	8.79
EER91898	Sorghum	cytosol	35.59	8.75
HORVU5Hr1G106440.1	Barley	cytosol	35.59	8.74
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	35.59	8.74
TraesCS4A01G232600.1	Wheat	cytosol	35.59	8.74
HORVU4Hr1G014100.3	Barley	cytosol	35.59	8.74
Zm00001d030011_P001	Maize	plasma membrane	35.03	8.61
TraesCS5B01G446600.1	Wheat	cytosol	35.03	8.6
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	35.03	8.6
CDX94125	Canola	endoplasmic reticulum, golgi	15.82	8.09
GSMUA_Achr11P...	Banana	cytosol	31.07	7.93
TraesCS6D01G406100.1	Wheat	cytosol	17.51	6.75
CDX80412	Canola	cytosol	15.82	5.54
CDX88073	Canola	cytosol	15.82	5.52
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	19.77	3.94
CDX68240	Canola	nucleus	10.17	3.51
CDY11124	Canola	mitochondrion	10.17	3.17
CDY66322	Canola	golgi, plastid	2.26	1.93
KRH66844	Soybean	cytosol	0.56	1.28

Protein Annotations

MapMan:35.1	GO:A0A078JGC5	UniProt:A0A078JGC5	EnsemblPlants:CDY66663	ProteinID:CDY66663	ProteinID:CDY66663.1
ncoils:Coil	InterPro:EIF3B	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0031369	EnsemblPlantsGene:GSBRNA2T00055529001	PFAM:PF08662
PANTHER:PTHR14068	SUPFAM:SSF50960	InterPro:TIF_beta_prop-like	UniParc:UPI0004EAEB6C	:	:

Description

BnaCnng51870DBnaCnng51870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGC5]

Coordinates

chrLK035396:-:3574..4241

Molecular Weight (calculated)

21173.0 Da

IEP (calculated)

9.201

GRAVY (calculated)

-0.476

Length

177 amino acids

Sequence
(BLAST)

001: MRTPGRVLKL VTLKAKQANA LFWSPTGKHM IIADGLNGKL EFYIVDMLMT MATVENFMAH IKWDPTGRYV VTVVASAVME DGFYIWSLYG KLLYRTLKEL
101: VFQFALRPRP PSLLSEQKEK EVKKNLRPYV ERYEEEDKEV LDLLSRQEME KRRVMEEEWE MWINKWKQLH EEEKLQR

Best Arabidopsis Sequence Match ( AT5G25780.1 )
(BLAST)

001: MAAVVDIDVL TAQLGINWSD VNLDSIQLPP GNDFGIESDD ESVYQDDQSE FDTGFGNIIV VDHLPVVPKE KFEKLEGVVK KIYNQLGVIK ENGLLMPVDP
101: DTKMTLGYCF IEFNTPQEAQ NAKEKSHGYK LDKSHIFAVN MFDDFDRLMN VKEEWEPPQE RPYVPGENLQ KWLTDDKARD QLVIRFGHDT EVYWNDARQK
201: KPEPVHKRSY WTESYVQWSP IGTYLVTLHK QGAAVWGGAD TFTRLMRYQH SMVKLVDFSP GEKYLVTYHS QEPSNPRDAS KVEIKVFDVR TGRMMRDFKG
301: SADEFSIGGP GGVAGASWPV FRWAGGKDDK YFAKLSKNTI SVYETETFSL IDKKSMKVDN VVDICWSPTD SILSLFVPEQ GGGNQPAKVA LVQIPSKVEL
401: RQKNLFSVSD CKMYWQSSGE YLAVKVDRYT KTKKSTYSGF ELFRIKERDI PIEVLELDNK NDKIIAFAWE PKGHRFAVIH GDQPRPDVSF YSMKTAQNTG
501: RVSKLATLKA KQANALFWSP TGKYIILAGL KGFNGQLEFF NVDELETMAT AEHFMATDIE WDPTGRYVAT SVTTVHEMEN GFTIWSFNGN MVYRILKDHF
601: FQLAWRPRPA SFLTAEKEEE IAKNLRNYSK RYEAEDQDVS LLLSEQDREK RRALNEEWQK WVMQWKSLHE EEKLVRQNLR DGEVSDVEED EYEAKEVEFE
701: DLIDVTEEIV QELM

Arabidopsis Description

EIF3B-2Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:Q8GUM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.