Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- mitochondrion 2
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0606100-00 | Rice | nucleus, plasma membrane | 12.08 | 21.74 |
| CDX68240 | Canola | nucleus | 35.27 | 14.23 |
| CDY11124 | Canola | mitochondrion | 28.02 | 10.23 |
| CDX94125 | Canola | endoplasmic reticulum, golgi | 10.14 | 6.07 |
| CDX80412 | Canola | cytosol | 12.08 | 4.95 |
| CDX88073 | Canola | cytosol | 11.59 | 4.73 |
| CDX76792 | Canola | cytosol | 15.94 | 4.62 |
| CDY34755 | Canola | cytosol | 15.94 | 4.62 |
| CDY36167 | Canola | cytosol | 14.98 | 4.34 |
| CDY45599 | Canola | cytosol | 14.98 | 4.34 |
| CDY66663 | Canola | mitochondrion | 1.93 | 2.26 |
Protein Annotations
| EnsemblPlants:CDY66322 | EnsemblPlantsGene:GSBRNA2T00053363001 | ProteinID:CDY66322 | ProteinID:CDY66322.1 | SEG:seg | UniParc:UPI0004EDE8CD |
| UniProt:A0A078JLS4 | MapMan:35.2 | : | : | : | : |
Description
BnaCnng50300DBnaCnng50300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLS4]
Coordinates
chrLK035192:-:13739..15188
Molecular Weight (calculated)
23523.0 Da
IEP (calculated)
10.324
GRAVY (calculated)
-0.195
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHMKALFHY VKMDQFMMFS GSSSGFRVCS CIWLYARLTS KLTMGMLKLF AKILIVHSNR LSGEMNTVHK LYLFMTAYVM YELKMVSPWL TMQNCDISLI
101: WTSLIKIFNY DRKRYFKKMF ERLYQAEWKP EFPDRFSEIS ELVKAVDSLK LEDGKSQGQG SAQKKAHAAA IQAKLLGGNP AGEMSKNALK NKKKKGAEAA
201: ASGANNA
101: WTSLIKIFNY DRKRYFKKMF ERLYQAEWKP EFPDRFSEIS ELVKAVDSLK LEDGKSQGQG SAQKKAHAAA IQAKLLGGNP AGEMSKNALK NKKKKGAEAA
201: ASGANNA
001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA
Arabidopsis Description
Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.