CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72169
CDY16358
CDY27241
CDY65406

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	CDX72169	AT3G56150.1	11029466
AT5G25780.1	CDY16358	AT3G56150.1	11029466
AT5G25780.1	CDY27241	AT3G56150.1	11029466
AT5G25780.1	CDY65406	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007832.1-P	Field mustard	cytosol	99.72	99.72
CDX76792	Canola	cytosol	99.44	99.44
CDY45599	Canola	cytosol	94.82	94.82
CDY36167	Canola	cytosol	94.68	94.68
AT5G25780.1	Thale cress	cytosol	89.36	89.36
AT5G27640.2	Thale cress	cytosol	92.16	89.16
Solyc01g088370.2.1	Tomato	nucleus, plastid	75.63	75.31
PGSC0003DMT400004200	Potato	cytosol	75.63	75.31
GSMUA_Achr11P...	Banana	cytosol	71.85	73.92
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	71.85	71.35
EER91898	Sorghum	cytosol	71.57	70.97
TraesCS5A01G442500.1	Wheat	cytosol, golgi	70.31	70.21
HORVU4Hr1G014100.3	Barley	cytosol	70.73	70.04
Zm00001d030011_P001	Maize	plasma membrane	70.59	70.0
HORVU5Hr1G106440.1	Barley	cytosol	70.59	69.9
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	70.31	69.63
TraesCS4B01G083200.1	Wheat	cytosol	68.63	69.5
TraesCS5B01G446600.1	Wheat	cytosol	70.17	69.49
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	70.17	69.49
TraesCS4A01G232600.1	Wheat	cytosol	70.03	69.35
TraesCS6B01G307400.1	Wheat	cytosol	65.69	68.17
TraesCS6D01G406100.1	Wheat	cytosol	32.49	50.54
CDY66663	Canola	mitochondrion	10.22	41.24
CDX88073	Canola	cytosol	28.01	39.45
CDX94125	Canola	endoplasmic reticulum, golgi	18.91	39.02
CDX80412	Canola	cytosol	27.45	38.81
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	42.58	34.23
CDX68240	Canola	nucleus	12.75	17.74
CDY11124	Canola	mitochondrion	13.31	16.75
CDY66322	Canola	golgi, plastid	4.62	15.94

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	GO:A0A078H8B7	UniProt:A0A078H8B7	EnsemblPlants:CDY34755
ProteinID:CDY34755	ProteinID:CDY34755.1	InterPro:EIF3B	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290
EnsemblPlantsGene:GSBRNA2T00057294001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR015943	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF08662	PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	UniParc:UPI0004EE8821
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:eIF3B_RRM	SEG:seg	:	:	:

Description

BnaA09g41220DEukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:A0A078H8B7]

Coordinates

chrLK032341:+:101685..104991

Molecular Weight (calculated)

82174.9 Da

IEP (calculated)

5.039

GRAVY (calculated)

-0.630

Length

714 amino acids

Sequence
(BLAST)

001: MAELDIDTRA AKLGIDWSQV NLDSIQLPPG ENFGIESDDE GVYHDDQLEF DTGFGNIIVV DNLPVVPKTK FEKLENVLKK IYSQLGVIKE KGLWMPVDPN
101: TGMTLGYCFI EFNTPQEAQN AKEKTHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEAPQTK PYVPGENLQK WLTDEKARDQ LVTRSGPDTE VFWNDARQKN
201: TELVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHN MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFGLI DKKSIKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY TMKTTQHGGR
501: VTKLGTLKAK QANALFWSPT GKYIILAGLK NFNGQLEFFN VDELETMATT EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGKL LYRNLKDHFF
601: QLAWRPRPPS FLSPEKEEEI AKNLKKYSKK YELEDQDVSL LLSEQDREKR KALKEEWEKW VKQWKSLHEE EKLARQSLRD GEVSDEEEEE DEAKEVKEVE
701: FEDVIEVTEE VVQE

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.